GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000022-TA|BGIBMGA000022-PA|IPR007087|Zinc finger,
C2H2-type
         (199 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    29   1.7  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z92973-3|CAB07491.1|  244|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    28   5.2  
AF016419-6|AAG24052.1|  223|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 131 KRCCSTCGIYFASSTRAAEHRRSAHI 156
           K  C  CG YF+      EHRR  H+
Sbjct: 11  KLLCGICGKYFSDDESLREHRRQRHM 36


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 131 KRCCSTCGIYFASSTRAAEHRRSAHI 156
           K  C  CG YF+      EHRR  H+
Sbjct: 11  KLLCGICGKYFSDDESLREHRRQRHM 36


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 133 CCSTCGIYFASSTRAAEHRRSAHIAPAKQAHMF 165
           CC  CG  F     A+ H +  H  P  Q H F
Sbjct: 245 CCPKCGASFTRRYLASTHIKEVHGEPKLQPHDF 277


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 133 CCSTCGIYFASSTRAAEHRRSAHIAPAKQAHMF 165
           CC  CG  F     A+ H +  H  P  Q H F
Sbjct: 245 CCPKCGASFTRRYLASTHIKEVHGEPKLQPHDF 277


>Z92973-3|CAB07491.1|  244|Caenorhabditis elegans Hypothetical
           protein Y6G8.3 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 126 RDDL-GKRCCSTCGIYFASSTRAAEHRRSAH 155
           R DL GK  C++CG +F  +     HRR  H
Sbjct: 18  RPDLRGKFICASCGQHFQHNASLNRHRRLLH 48


>U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical
           protein F18C5.5 protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 68  RFLPPPYPITQVDGHLTIPDFQEHDGKSFAP 98
           +F+P P P+   +G  T+P    H   +F P
Sbjct: 98  QFIPVPVPVLSAEGLPTLPTLAPHTFPTFTP 128


>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)

Query: 105 LPIQPLNAFISTLYDLYYPS 124
           LP++PL AFIS+ Y  YYP+
Sbjct: 36  LPVRPLKAFISSSY--YYPT 53


>AF016419-6|AAG24052.1|  223|Caenorhabditis elegans Hypothetical
          protein F07G11.7 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 39 SQYLLQVVKCDDQKCCSPRRSDLHMILHDRFLPPPYPITQ 78
          S+  LQ +K   +K    R+SD+    HD FLP    IT+
Sbjct: 2  SRQHLQKIKNHTRKRRIKRKSDIFQAFHDCFLPKLETITE 41


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,651,749
Number of Sequences: 27539
Number of extensions: 246009
Number of successful extensions: 654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 12
length of query: 199
length of database: 12,573,161
effective HSP length: 78
effective length of query: 121
effective length of database: 10,425,119
effective search space: 1261439399
effective search space used: 1261439399
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)