Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.1  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    20   7.8  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    20   7.8  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    20   7.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 59  KNNIRDDRYVNKQNY-RFWGTENPRVMH 85
           KN+   + Y+N QNY + +  E+P   H
Sbjct: 363 KNHPNSENYINHQNYVQGYQGEHPNYNH 390


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 59  KNNIRDDRYVNKQNY-RFWGTENPRVMH 85
           KN+   + Y+N QNY + +  E+P   H
Sbjct: 311 KNHPNSENYINHQNYVQGYQGEHPNYNH 338


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 68  VNKQNYRFWGTENPRVMHEKPLH 90
           +N   Y F G   P V H  PL+
Sbjct: 203 INVMAYDFHGAFEPFVGHYAPLY 225


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 68  VNKQNYRFWGTENPRVMHEKPLH 90
           +N   Y F G   P V H  PL+
Sbjct: 204 INVMAYDFHGAFEPFVGHYAPLY 226


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 68  VNKQNYRFWGTENPRVMHEKPLH 90
           +N   Y F G   P V H  PL+
Sbjct: 204 INVMAYDFHGAFEPFVGHYAPLY 226


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,743
Number of Sequences: 317
Number of extensions: 1620
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 148
length of database: 114,650
effective HSP length: 52
effective length of query: 96
effective length of database: 98,166
effective search space:  9423936
effective search space used:  9423936
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)