Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    28   0.51 
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   2.7  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   2.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   4.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    24   8.3  

>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 19  AGGIIVDFFFENAAGQTTTMDDFFVGFLKSRDYVNKLETLKNNIRDDRYVNKQNYRFWGT 78
           +GG+ +  F + +A    T  D +  F    D +  +ET K N R ++ +  Q + ++  
Sbjct: 187 SGGLNIHTFEDLSAFNEDTAADGYKEF--QLDILKAIETDKQNDRLNKLLGLQLHPYFRK 244

Query: 79  ENPRVMHEKPLHL 91
            +PR  H  PL++
Sbjct: 245 AHPREEHFVPLYV 257


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)

Query: 42  FVGFLKSRDYVNKLETLKN 60
           FVG+ KS++ ++ ++TLKN
Sbjct: 494 FVGYSKSKEMIHLMKTLKN 512



 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)

Query: 125 FVGFLKSRDYVNKLETLKN 143
           FVG+ KS++ ++ ++TLKN
Sbjct: 494 FVGYSKSKEMIHLMKTLKN 512


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 65  DRYVNKQNYRFWGTENPRVMHE 86
           DRY+   N   WG+E+ +V  E
Sbjct: 215 DRYIRLWNISLWGSEDEKVSEE 236


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 26  FFFENAAGQTTTMDD--FFVGFLKSRDYVNKLETLKNNIRDDRYV--NKQN--YRFW 76
           F+FEN  GQ+  + D  F    L   D  N ++ L + +  ++ +   +QN  Y FW
Sbjct: 398 FYFENNEGQSIVVQDGVFRTNCLDCLDRTNVIQNLVSRVFLEQVMIYTRQNAGYDFW 454


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 52  VNKLETLKNNIRDDRYVNKQNYRFWGT 78
           VNKL+ L + I+  RY    NY +W T
Sbjct: 689 VNKLDDLYSLIKFMRYEPWCNYTYWQT 715


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 49  RDYVNKLETLKNNIRDDRYVNKQNYR 74
           R+ V++L    +N+R  R + KQN++
Sbjct: 99  RNSVSRLSRSSSNVRQQRDIPKQNFK 124


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
            Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 19   AGGIIVDFFFENAAGQTTTMDDFFVGFLKS 48
            AG ++VD   ++A   TTT  D F G+  S
Sbjct: 1031 AGTVLVDIPQQHATTTTTTTFDGFSGYTSS 1060



 Score = 24.2 bits (50), Expect = 8.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 102  AGGIIVDFFFENAAGQTTTMDDFFVGFLKS 131
            AG ++VD   ++A   TTT  D F G+  S
Sbjct: 1031 AGTVLVDIPQQHATTTTTTTFDGFSGYTSS 1060


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,163
Number of Sequences: 5004
Number of extensions: 29765
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 10
length of query: 148
length of database: 2,362,478
effective HSP length: 67
effective length of query: 81
effective length of database: 2,027,210
effective search space: 164204010
effective search space used: 164204010
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)