Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           50   1e-06
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             30   0.68 
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     27   6.4  
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 67  YVNKQNYRFWGTENPRVMHEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMD 122
           +VN +N  FWG++ P  + ++PLH +K TAW A+   GII  F+FE+  G++ T++
Sbjct: 578 HVNTKNNIFWGSKVPEEVLQRPLHSVKCTAW-AMSKHGIIGPFWFEDDDGRSQTVN 632



 Score = 34.3 bits (75), Expect = 0.042
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 3   EKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMD 39
           ++PLH +K TAW A+   GII  F+FE+  G++ T++
Sbjct: 597 QRPLHSVKCTAW-AMSKHGIIGPFWFEDDDGRSQTVN 632


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 67  YVNKQNYRFWGTENPRVMHEKPLHLLK 93
           +VN +N  FWG++ P  + ++PLH +K
Sbjct: 211 HVNTKNNIFWGSKVPEEVLQRPLHSVK 237


>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 40   DFFVGFLKSRDYVNKLETLKNNIRDDRYVNKQNYRFWGTENPRVMHEKPLHLLKVTAWSA 99
            D  + F +  D+  K+E  + +  DD   +K   R    + P V+H KP H++ +   S 
Sbjct: 1499 DLALYFQRRGDFFKKVENRELDWSDDS--SKDLLR-QPDQGPTVLHRKPNHMVGILGESL 1555

Query: 100  VH 101
            VH
Sbjct: 1556 VH 1557


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 47   KSRDYVNKLETLKNNIRDDR-YVNKQNYRFWGTENPRVMHEKPLHLLKV 94
            + RDY+NK++ LK  +++ R  ++K  +      + R   +K L+ LK+
Sbjct: 1200 EERDYINKIKKLKAKLKEKREIIDKLKHEKMVVTSERSDLQKELYELKM 1248


>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 72  NYRFWGTENPRVMHEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMDDFFVGFLKS 131
           N + W T N R +H    H+  VT  +AV  G  ++     + +G +T  +    G ++S
Sbjct: 319 NIKLWDTSNGREVHNFSAHMGSVTGLTAV--GNTLLTTAGIHVSGLSTAAEFATEGTIRS 376

Query: 132 R 132
           +
Sbjct: 377 Q 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,934,291
Number of Sequences: 59808
Number of extensions: 180989
Number of successful extensions: 271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 8
length of query: 148
length of database: 16,821,457
effective HSP length: 76
effective length of query: 72
effective length of database: 12,276,049
effective search space: 883875528
effective search space used: 883875528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)