Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011396-1|AAH11396.2|  661|Homo sapiens pseudouridylate synthas...    29   6.3  
AB067484-1|BAB67790.1|  645|Homo sapiens KIAA1897 protein protein.     29   6.3  

>BC011396-1|AAH11396.2|  661|Homo sapiens pseudouridylate synthase 7
           homolog (S. cerevisiae) protein.
          Length = 661

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 42  FVGFLKSRDYVNKLETLKNNIRDDRYVNKQNYRFWGTENPRVMHEKPLHLLKVTAWSAVH 101
           FV + +++D ++ +  L   +R    V    + + GT++ R +  + + +LK+TA    H
Sbjct: 260 FVLYKENKDTMDAINVLSKYLR----VKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAH 315

Query: 102 AGGIIVDFFFENAAGQ 117
               +++F   N + Q
Sbjct: 316 LNKCLMNFKLGNFSYQ 331


>AB067484-1|BAB67790.1|  645|Homo sapiens KIAA1897 protein protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 42  FVGFLKSRDYVNKLETLKNNIRDDRYVNKQNYRFWGTENPRVMHEKPLHLLKVTAWSAVH 101
           FV + +++D ++ +  L   +R    V    + + GT++ R +  + + +LK+TA    H
Sbjct: 244 FVLYKENKDTMDAINVLSKYLR----VKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAH 299

Query: 102 AGGIIVDFFFENAAGQ 117
               +++F   N + Q
Sbjct: 300 LNKCLMNFKLGNFSYQ 315


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,270,690
Number of Sequences: 224733
Number of extensions: 744401
Number of successful extensions: 1060
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 2
length of query: 148
length of database: 73,234,838
effective HSP length: 83
effective length of query: 65
effective length of database: 54,581,999
effective search space: 3547829935
effective search space used: 3547829935
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)