GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310...    29   1.5  
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939...    27   4.7  

>04_03_0813 -
           19929562-19929798,19930209-19930580,19930686-19931039,
           19931120-19931188,19931294-19931479,19932762-19932989,
           19933655-19934020,19934154-19934354,19934923-19935093,
           19935178-19935285,19935423-19935635,19936093-19936299,
           19936485-19936586,19936714-19936902,19937766-19937933
          Length = 1056

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 58  LKNNIRD-DRYVNKQNYRFWGTENPRVMHEKPLHLLKVT 95
           LK  +R+ D  V K+  R W    P V + KP+H  K T
Sbjct: 346 LKTKLRNADLQVKKEQLRIWTGFKPPVTNTKPIHNQKFT 384


>07_03_1760 -
           29289997-29290377,29290539-29290755,29291152-29293953,
           29294134-29294178,29294274-29294358,29294791-29294875,
           29296429-29296530,29296747-29296851,29296940-29297029,
           29297163-29297258
          Length = 1335

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 52  VNKLETLKNNIRDDRYVNKQNYRFWGTENPRVMHEKPL 89
           V+K ET+  N  D    N  N   W T +     EK L
Sbjct: 375 VDKTETIGGNCLDSSNQNNVNIALWSTPSKETFSEKTL 412


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,320,213
Number of Sequences: 37544
Number of extensions: 162684
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 2
length of query: 148
length of database: 14,793,348
effective HSP length: 76
effective length of query: 72
effective length of database: 11,940,004
effective search space: 859680288
effective search space used: 859680288
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)