GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3399|AAF51628.1| 1088|Drosophila melanogaster CG13251-P...    29   1.9  
BT001291-1|AAN71047.1|  524|Drosophila melanogaster AT09990p pro...    27   7.8  
AE014296-1896|AAF50102.1|  524|Drosophila melanogaster CG7828-PA...    27   7.8  

>AE014296-3399|AAF51628.1| 1088|Drosophila melanogaster CG13251-PA
           protein.
          Length = 1088

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 29  ENAAGQTTTMDDFFVGFLKSRDYVNKLETLKNNIRDDRYVNKQNYR-FWGTENPRVMHEK 87
           E     TTT    F    K +D   K + LK N+  D+  NK + R  WG   P V + K
Sbjct: 884 ETTTTTTTTTTTTFKAKSKDKD---KEKNLKRNLNKDKDANKMDDRPKWGVNRPVVQYVK 940


>BT001291-1|AAN71047.1|  524|Drosophila melanogaster AT09990p
           protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 74  RFWGTENPRVMHEKPLHLLKVTAWSAVHAGGIIVDFF--FENAAGQTTTMDDFFVGFLKS 131
           R WG     ++    + L+ VTA     A G+++     F  A G T   +D    F   
Sbjct: 23  RLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVADGSTVKEEDLGNNFFLD 82

Query: 132 RDYVNKLETL 141
             Y+ K + L
Sbjct: 83  SSYLGKSKAL 92


>AE014296-1896|AAF50102.1|  524|Drosophila melanogaster CG7828-PA
           protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 74  RFWGTENPRVMHEKPLHLLKVTAWSAVHAGGIIVDFF--FENAAGQTTTMDDFFVGFLKS 131
           R WG     ++    + L+ VTA     A G+++     F  A G T   +D    F   
Sbjct: 23  RLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVADGSTVKEEDLGNNFFLD 82

Query: 132 RDYVNKLETL 141
             Y+ K + L
Sbjct: 83  SSYLGKSKAL 92


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,331,408
Number of Sequences: 52641
Number of extensions: 278254
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 3
length of query: 148
length of database: 24,830,863
effective HSP length: 79
effective length of query: 69
effective length of database: 20,672,224
effective search space: 1426383456
effective search space used: 1426383456
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)