GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr...    26   9.6  
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr...    26   9.6  
Z38112-4|CAA86231.2|  849|Caenorhabditis elegans Hypothetical pr...    26   9.6  
U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical pr...    26   9.6  
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.     26   9.6  

>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 47   KSRDYVNKLETLK------NNIRDDRYVNKQNYRFWGTENPRVMHEKPLHLLKVTAWSAV 100
            +  DY+N L+TL       N+I    ++  +N  +W TE+  +   +     ++   +  
Sbjct: 1616 EQEDYLNSLKTLSQWVNIDNDIGPSPHIFSRNIEYWATESTILKMIRNDERDEIVNNAIE 1675

Query: 101  HAGGIIVDFFFENAAGQTTTMDDFFVGFLKSRDYVNKLETLKNNIRDE 148
            +A   +++   E A G + +  +    FL     +N++  LKN   DE
Sbjct: 1676 NAKSKVIERLSECAIGGSCSY-EIATPFLVELQKLNEIVELKNVSNDE 1722


>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
            C14B4.2 protein.
          Length = 1776

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 2    HEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMD 39
            H    H+LK+TAW+  + G I          G    MD
Sbjct: 1309 HVVDCHVLKLTAWAVCNTGPIGAQIVLITVLGVLVNMD 1346



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 85   HEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMD 122
            H    H+LK+TAW+  + G I          G    MD
Sbjct: 1309 HVVDCHVLKLTAWAVCNTGPIGAQIVLITVLGVLVNMD 1346


>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
            C14B4.2 protein.
          Length = 1776

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 2    HEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMD 39
            H    H+LK+TAW+  + G I          G    MD
Sbjct: 1309 HVVDCHVLKLTAWAVCNTGPIGAQIVLITVLGVLVNMD 1346



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 85   HEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMD 122
            H    H+LK+TAW+  + G I          G    MD
Sbjct: 1309 HVVDCHVLKLTAWAVCNTGPIGAQIVLITVLGVLVNMD 1346


>Z38112-4|CAA86231.2|  849|Caenorhabditis elegans Hypothetical
           protein E03A3.6 protein.
          Length = 849

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 73  YRFWGTENPRVMHEKPLHLLKVTAWSAV 100
           + +W   NP+++H K +   +V AW  V
Sbjct: 240 FHYWPFPNPQILHRKTIQ-YRVHAWRTV 266


>U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical
           protein T21E12.2 protein.
          Length = 380

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 48  SRDYVNKLETLKNNIRDDRYVNKQNYRFWGTENPRVMHEKPLHLLK 93
           S++ + ++  LKN +   R  + Q     G EN + ++  P HLLK
Sbjct: 260 SKEDIRQMLLLKNVVVTQRLNSLQQRALPGIENVKNIYPLPQHLLK 305


>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
          Length = 2084

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 73  YRFWGTENPRVMHEKPLHLLKVTAWSAV 100
           + +W   NP+++H K +   +V AW  V
Sbjct: 223 FHYWPFPNPQILHRKTIQ-YRVHAWRTV 249


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,837,270
Number of Sequences: 27539
Number of extensions: 153958
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 8
length of query: 148
length of database: 12,573,161
effective HSP length: 75
effective length of query: 73
effective length of database: 10,507,736
effective search space: 767064728
effective search space used: 767064728
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)