GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl
          cyclase beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 5  PLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMDDFFVGFLKSRDYVNKLETLKNNIRD 64
          P +L+   A  A+   G+    FF+        M   FVGF+    Y   L  L  ++RD
Sbjct: 43 PENLIPRLAKKAIQVLGVTEKEFFDQ-------MGVHFVGFVGQYGYDRVLSVLGRHVRD 95



 Score = 21.8 bits (44), Expect = 3.1
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 88  PLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMDDFFVGFLKSRDYVNKLETLKNNIRD 147
           P +L+   A  A+   G+    FF+        M   FVGF+    Y   L  L  ++RD
Sbjct: 43  PENLIPRLAKKAIQVLGVTEKEFFDQ-------MGVHFVGFVGQYGYDRVLSVLGRHVRD 95


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
          receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 1  MHEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMDDF 41
          +HE+   L  + +     +GG+ + +F ++AA  T+T   +
Sbjct: 43 VHEEESSLNDLFSGPEESSGGVELGWFNDSAAAITSTSPSY 83



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 84  MHEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMDDF 124
           +HE+   L  + +     +GG+ + +F ++AA  T+T   +
Sbjct: 43  VHEEESSLNDLFSGPEESSGGVELGWFNDSAAAITSTSPSY 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,755
Number of Sequences: 429
Number of extensions: 2066
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 148
length of database: 140,377
effective HSP length: 52
effective length of query: 96
effective length of database: 118,069
effective search space: 11334624
effective search space used: 11334624
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)