GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000019-TA|BGIBMGA000019-PA|undefined
         (148 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37730.1 68415.m04627 fringe-related protein similarity to pr...    26   9.1  
At1g11720.1 68414.m01345 starch synthase, putative strong simila...    26   9.1  

>At2g37730.1 68415.m04627 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 532

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/54 (24%), Positives = 21/54 (38%)

Query: 80  NPRVMHEKPLHLLKVTAWSAVHAGGIIVDFFFENAAGQTTTMDDFFVGFLKSRD 133
           +P  +H KP  +   T     H   ++  FFF      +  M  F++ F    D
Sbjct: 5   DPFKLHHKPPSIFPATTVKPSHVLSLVAKFFFTICIFISVAMISFYIIFFGCSD 58


>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 82  RVMHEKPLHLLKVTAWSAVHAGGIIV 107
           R+ H+K +HL+K   W  +   G +V
Sbjct: 837 RLTHQKGIHLIKHAIWRTLERNGQVV 862


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,013
Number of Sequences: 28952
Number of extensions: 139559
Number of successful extensions: 257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 4
length of query: 148
length of database: 12,070,560
effective HSP length: 75
effective length of query: 73
effective length of database: 9,899,160
effective search space: 722638680
effective search space used: 722638680
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)