Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000018-TA|BGIBMGA000018-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (59 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    19   3.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    19   3.9  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    19   3.9  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 8   FFLFVVVFATASAKPWNFFKEIERAVART 36
           FF    ++ T S K    FK I++    T
Sbjct: 88  FFYLSYIYTTYSRKLSGIFKYIDQMAGYT 116


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 7   IFFLFVVVFATASAKPWNFFKEIE 30
           IF L +  F     K W+FF  ++
Sbjct: 315 IFSLDLDTFKKIMQKAWSFFTALK 338


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory
          receptor candidate 14 protein.
          Length = 374

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 8  FFLFVVVFATASAKPWNFFKEIERAVART 36
          FF    ++ T S K    FK I++    T
Sbjct: 44 FFYLSYIYTTYSRKLSGIFKYIDQMAGYT 72


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.338    0.143    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7552
Number of Sequences: 317
Number of extensions: 140
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 114,650
effective HSP length: 39
effective length of query: 20
effective length of database: 102,287
effective search space:  2045740
effective search space used:  2045740
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (19.4 bits)
S2: 34 (17.8 bits)