Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000018-TA|BGIBMGA000018-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (59 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   26   5.1  
SB_2281| Best HMM Match : Ras (HMM E-Value=3.4e-06)                    25   6.7  

>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 11   FVVVFATASAKPWNFFKEIERAVARTRD 38
            F+V+FA  SA  WN  K++   + R  +
Sbjct: 2660 FLVLFAINSASSWNELKDLRGKIIREHE 2687


>SB_2281| Best HMM Match : Ras (HMM E-Value=3.4e-06)
          Length = 138

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 11 FVVVFATASAKPWNFFKEIERAVAR 35
          F+V+FA  SA  WN  K++   + R
Sbjct: 50 FLVLFAINSASSWNELKDLRGKIIR 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.338    0.143    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,739
Number of Sequences: 59808
Number of extensions: 15381
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 2
length of query: 59
length of database: 16,821,457
effective HSP length: 38
effective length of query: 21
effective length of database: 14,548,753
effective search space: 305523813
effective search space used: 305523813
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 52 (25.0 bits)