GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000018-TA|BGIBMGA000018-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (59 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    23   4.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   6.4  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    23   6.4  

>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 509

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 6  IIFFLFVVVFATASAKPW 23
          I+FFLF + FA     PW
Sbjct: 7  ILFFLFGIAFANNLNIPW 24


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 3   FTRIIFFLFVVVFATASAKPWNFF 26
           FT  I++L ++V AT      NF+
Sbjct: 586 FTMFIYYLCILVLATYYVMKHNFY 609


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 2   NFTRIIFFLFVVVFA-TASAKPWNFFKEIERA 32
           N   + F LF++VFA  AS   W+   + ER+
Sbjct: 394 NRESLYFILFLLVFAIAASGYVWHVGSKTERS 425


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.338    0.143    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,946
Number of Sequences: 5004
Number of extensions: 2525
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 2,362,478
effective HSP length: 40
effective length of query: 19
effective length of database: 2,162,318
effective search space: 41084042
effective search space used: 41084042
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.8 bits)
S2: 45 (22.2 bits)