GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000017-TA|BGIBMGA000017-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (61 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       26   3.8  

>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 29  KDLEKMGQRVRDAVISAAPAVDTLAKAK 56
           KDLE++ QR+R+A I   P   T AK++
Sbjct: 833 KDLEEVFQRLRNANIKLNPKKCTFAKSE 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,705
Number of Sequences: 59808
Number of extensions: 17208
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 1
length of query: 61
length of database: 16,821,457
effective HSP length: 40
effective length of query: 21
effective length of database: 14,429,137
effective search space: 303011877
effective search space used: 303011877
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)