GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000017-TA|BGIBMGA000017-PA|IPR000875|Cecropin,
IPR003254|Insect immunity protein and cecropin
         (61 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   4.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    18   8.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 34  MGQRVRDAVISA 45
           M QR RD ++SA
Sbjct: 390 MAQRHRDTIVSA 401


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
          protein JHBP-1 protein.
          Length = 253

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 34 MGQRVRDAVISAA 46
          + + VRDAV+S A
Sbjct: 44 IAEAVRDAVVSLA 56


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7642
Number of Sequences: 429
Number of extensions: 116
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 61
length of database: 140,377
effective HSP length: 41
effective length of query: 20
effective length of database: 122,788
effective search space:  2455760
effective search space used:  2455760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)