GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000016-TA|BGIBMGA000016-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR000611|Neuropeptide Y receptor
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    31   0.27 
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    28   2.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   4.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   4.4  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    27   4.4  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   7.7  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 44  LCKACGAIQAISIFVSTISITAIALDRYQLIVYPTKPGVQTIGALVTMFFIWVTAFILAS 103
           L K  G    IS+F++TI+   I    +    Y    GVQ  GA++   ++  T    A+
Sbjct: 171 LQKGYGLGSGISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMFTWDNKAA 230

Query: 104 PLY--IFRS 110
            LY   FRS
Sbjct: 231 ALYQAFFRS 239


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 244 FRKEFEEILTKCCCRKKPLVNGTRTTNRRMETE------LTALAQLEHTVTGNTKTSQCS 297
           F    + IL  C   K   +   R  N+R+ T       +T ++   H       TS   
Sbjct: 289 FNPHNDFILATCSTDKTIALWDLRNLNQRLHTLEGHEDIVTKISFSPHEEPILASTSADR 348

Query: 298 QSITIDLEAINPDP----GRPFPPELMFLFGNKTKHELEIEEC 336
           +++  DL  I  D      +  PPEL+F+ G  T   ++++ C
Sbjct: 349 RTLVWDLSRIGEDQPAEEAQDGPPELLFMHGGHTSCTIDMDWC 391


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 28   LMELLTKHWPLPDWPSLCKACGAIQAISIFVSTISITAI 66
            L  L    + L +W S C+ACG     S  VS +  T I
Sbjct: 2555 LCSLCDSRFSLMEWRSQCRACGNSNVCSDCVSMLKDTNI 2593


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 4/27 (14%)

Query: 179 AILIAIAVTYVISWLPLNVFNLVADFS 205
           AI +A+++TYV+ W    VFN+V  F+
Sbjct: 297 AIALALSITYVLGW----VFNIVLAFT 319


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 274 ETELTALAQLEHTVTGNTKTSQCSQSITIDLEAINPDPGRPFPPELMFLFGNKTKHELEI 333
           +  + + ++++HT+   T  +Q +    + L+     PG+ +   L F+ G +  H L+ 
Sbjct: 263 KAHIVSRSEVDHTLAERTVLAQVNNPFIVPLKFSFQSPGKLY-LVLAFVNGGELFHHLQR 321

Query: 334 EEC 336
           E C
Sbjct: 322 EGC 324


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 34  KHW--PLPDWPS----LCKACGAIQAISIFVSTISITAIALDRYQLIVYPTKPGVQTIGA 87
           ++W  P+P W S         G+I+ +       +IT I  D    I  P+K G  T+  
Sbjct: 457 RYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVSNITDIHRDSIDHITIPSKKGKGTLHR 516

Query: 88  LVTMFFIWVTAFIL--ASPLYIFRSLKTHKLG 117
           +  +F  W  +  +  AS  Y F  ++  K G
Sbjct: 517 VSEVFDCWFESGSMPYASRHYPFERIEEFKHG 548


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,569
Number of Sequences: 5004
Number of extensions: 63599
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 6
length of query: 383
length of database: 2,362,478
effective HSP length: 74
effective length of query: 309
effective length of database: 1,992,182
effective search space: 615584238
effective search space used: 615584238
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)