GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000016-TA|BGIBMGA000016-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR000611|Neuropeptide Y receptor
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           29   6.2  
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897...    29   8.3  

>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 189  VISWLPLNVFNLVADFSSAPFKDEKTMTVTYAVCHMFGM 227
            +++W+ L +  ++A F SA F         YA C +FG+
Sbjct: 1039 ILTWIVLIIPIVIASFFSAAFSKALDFAGVYANCFLFGI 1077


>07_03_0333 -
           16888606-16888740,16889463-16889570,16889691-16889790,
           16890473-16890560,16890637-16893253
          Length = 1015

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 9   IVNLAVS-DALVCVVGTPLTLMELLTKHWPLPDWPSLCKACGAIQAISIFVSTISITAIA 67
           I  LAV+ + ++ + G    L + +     +PD+      C     I+IF S  ++    
Sbjct: 261 IPKLAVTYNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAE 320

Query: 68  LDRYQLIVYPTKPGVQTIGALVTMF 92
                +IV  T P V+T   ++T+F
Sbjct: 321 ALFASMIVRGTNPDVKTFNVMMTLF 345


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,987,652
Number of Sequences: 37544
Number of extensions: 381694
Number of successful extensions: 1082
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 2
length of query: 383
length of database: 14,793,348
effective HSP length: 83
effective length of query: 300
effective length of database: 11,677,196
effective search space: 3503158800
effective search space used: 3503158800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)