GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000016-TA|BGIBMGA000016-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR000611|Neuropeptide Y receptor
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    34   0.14 
At3g21480.1 68416.m02710 transcription activation domain-interac...    31   1.3  
At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase, pu...    29   6.9  
At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to...    29   6.9  
At3g20460.1 68416.m02590 sugar transporter, putative similar to ...    28   9.1  
At2g29620.1 68415.m03598 expressed protein                             28   9.1  

>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 240 LNDNFRKEFEEILTKCCCRKKPLVNGTRTTNRRMETELTALAQLEHTVTGNTKTSQCSQS 299
           LN+N  +  +++  K   +   L      + R ++ ELT +  L H + G  KT Q S+ 
Sbjct: 397 LNENLDRALDDV-NKSKDKVADLTEKYEDSKRMLDIELTTVKNLRHELEGTKKTLQASRD 455

Query: 300 ITIDLEAI 307
              DLE +
Sbjct: 456 RVSDLETM 463


>At3g21480.1 68416.m02710 transcription activation
           domain-interacting protein-related contains weak
           similarity to Pax transcription activation domain
           interacting protein PTIP (GI:4336734) [Mus musculus]
          Length = 1045

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 255 CCCRKKPLVNGTRTTNRRMETELTALAQLEHTVTGN----TKTSQCSQSITIDLEAINPD 310
           CC + + +   +R T + +  E   ++Q  +T   +     +    +Q     + A++  
Sbjct: 550 CCWKSRKVQTASRETKKNLVDEFDEVSQESNTEMFDRHEEAEAGPDTQMAAEVMNALHSG 609

Query: 311 PGRPFPPELMFLFGNKTKHELEIEECMVEFAECVAIKAFRFIEN 354
            GR   PE   L G K   E  I  C V   +   IK  + ++N
Sbjct: 610 DGREIDPEPNNLIGKKLLLEGGISRCGVVTRKSKRIKGIQAVDN 653


>At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase (XTR9) GI:4218963 from
           [Arabidopsis thaliana]
          Length = 284

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 187 TYVISWLPLNVFNLVADFSSAPFKDEKTMTVTYAVCHMFGMSSAV---------SNPLLY 237
           TY + W PLN+  LV       FK+ +   V Y       + S++            +  
Sbjct: 144 TYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKT 203

Query: 238 GWLNDNFRKEFEEILTKCCCRKKPLVN 264
            W N  F   ++      CC +  L+N
Sbjct: 204 DWTNAPFSASYKSFNDVDCCSRTSLLN 230


>At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 373

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 120 GISSLSFCIEDWPITDGRAIYSLLSLIFQYLLPVLVVVMAHIQIH 164
           G S+LSF ++ W I     ++S L   F  L  V+V ++A +  H
Sbjct: 250 GASALSFTVQAWAIAKRGPVFSAL---FNPLCTVIVTILAALFFH 291


>At3g20460.1 68416.m02590 sugar transporter, putative similar to
           ERD6 protein [Arabidopsis thaliana] GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 488

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 118 IAGISSLSFCIEDWPITDGRAIYSLLSLIFQYLLPVLVVVMAHIQIHXXXXXXXXXXXXX 177
           +AG   ++F    W +  GR    + + +  Y++PV +V +A  ++              
Sbjct: 131 MAGWLMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEIAPKKVRGTFSAINSL---- 186

Query: 178 PAILIAIAVTY----VISWLPLNVFNLV 201
             +  ++AVTY    VISW  L + + V
Sbjct: 187 -VMCASVAVTYLLGSVISWQKLALISTV 213


>At2g29620.1 68415.m03598 expressed protein
          Length = 747

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 76  YPTKPGVQTIGALVTMFFIWVTAFIL-ASPLYIFRS--LKTHKL 116
           YP   GV T   ++  F  WV  F+L +SPL  F S  ++ H L
Sbjct: 31  YPIVSGVSTFLIILYTFLPWVFYFLLCSSPLIAFASFYIRNHDL 74


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,271,214
Number of Sequences: 28952
Number of extensions: 323029
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 6
length of query: 383
length of database: 12,070,560
effective HSP length: 82
effective length of query: 301
effective length of database: 9,696,496
effective search space: 2918645296
effective search space used: 2918645296
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)