GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000015-TA|BGIBMGA000015-PA|IPR012464|Protein of unknown
function DUF1676
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    30   0.36 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    28   1.9  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    27   3.3  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    27   4.4  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   4.4  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   7.7  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   7.7  

>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 170 MPATFRDLNTATTKSVEAIEEVKTPREFLQPQPRLIAQRKNARKNKPK 217
           +PA F D   A TK   AI  +   R   +P    IA   +A+ +KPK
Sbjct: 148 VPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPK 195


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 67  YSQYPIDFPSASSHAYSMNGVSPQFASPDIYNPTGLGQSNVHDILQHDANAQPSQQAP 124
           YS YP+      SH  + +G++   ++   + P     S+   +L+  A++ PS  AP
Sbjct: 223 YSSYPVRSSPQLSHEDTRHGIASSGSTRYPFVPANTRASHSPSLLEPYAHSLPSSVAP 280


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 83  SMNGVSPQFASPDIYNPTGLGQSNVH-DILQHDANAQPSQQAPTLQLINGTRAAERWDGK 141
           S  GVS Q   P  +NP    QS VH D L+  + + P+       L            K
Sbjct: 338 STTGVSNQQNHPAAWNPDNKPQSIVHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCK 397

Query: 142 SKLERLFDP 150
           S+LE LF P
Sbjct: 398 SQLEDLFSP 406


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 170 MPATFRDLNTATTKSVEAIEEVKTPREFLQPQPRLIAQRKNARKN 214
           +PA    L +  T  + AI  +KT R F+Q QP +   +K  R N
Sbjct: 18  IPAMAIFLRSTITLPI-AIASLKTARRFVQVQPLIKEAKKRCRTN 61


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 159 IEPIATVVYDAMPATFRDLNTATTKSVEAIEEVKTPREFLQPQPRLIA 206
           + P+     D +   F D N  +   V    E  TP E LQ    L+A
Sbjct: 37  VSPVEETALDKVDPEFSDPNFDSNAYVSKFMEKATPAELLQRDKSLVA 84


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 81  AYSMNGVSPQFASPDIYNPTGLGQSNVHDILQHDANAQPSQQA 123
           AY+MNGV P +     Y P   G  N+H  +  D+    SQ++
Sbjct: 682 AYTMNGVPPMYGQ---YAPNN-GMMNMHYPMYGDSRRSNSQRS 720


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 185 VEAIEEVKTPREFLQPQPRLIAQRKNARKNKPKKFSGIKISLNRLKHNKDLDDY 238
           + A+ EVK       P P +    +  RK +  K SG++I  N    + D+++Y
Sbjct: 445 IPALPEVKQIIRVDDPSPSI----RQGRKKRHAKRSGVEIKSNLEAKSNDVEEY 494


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 72  IDFPSASSHAYSMNGVS-PQFASPDIYNPTGLGQSNVHDILQHDANAQPSQQAPTLQLIN 130
           IDF  A + +YS   +S  +F  PD++N     Q +++ ++      + +Q  P   ++ 
Sbjct: 359 IDFTLARA-SYSQGIISYNEFNDPDLFNGVDDYQFDIYRLMSRVTKGRWAQFFPITNVLW 417

Query: 131 GTRAAERWDGKSKL-------ERLFDPIIKKFRRIIEPIATVVYDAMPATFRDLNTATT 182
                 +   K  L       E L    +K+  R+I+P+ T+ +     + R  +T T+
Sbjct: 418 LHYLIHQLLHKKNLSSPLTETETLMRSRLKQIFRLIDPVKTMQFQQAEDSIRSKSTVTS 476


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,530
Number of Sequences: 5004
Number of extensions: 52457
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 8
length of query: 303
length of database: 2,362,478
effective HSP length: 72
effective length of query: 231
effective length of database: 2,002,190
effective search space: 462505890
effective search space used: 462505890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)