GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000015-TA|BGIBMGA000015-PA|IPR012464|Protein of unknown
function DUF1676
         (303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0134 + 18318618-18318797,18318930-18319084,18319138-183192...    29   3.5  
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    28   8.1  
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493...    28   8.1  
03_02_0488 - 8824980-8825267,8825364-8827775                           28   8.1  

>05_04_0134 +
           18318618-18318797,18318930-18319084,18319138-18319254,
           18319286-18319412,18319740-18320216
          Length = 351

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/64 (28%), Positives = 25/64 (39%)

Query: 139 DGKSKLERLFDPIIKKFRRIIEPIATVVYDAMPATFRDLNTATTKSVEAIEEVKTPREFL 198
           DGKS++      I+      + P+   VYD +     D   A T S E   E     E+ 
Sbjct: 176 DGKSRITEEMMAIVGAKEPAMLPVQRNVYDLLALVLNDAGYARTSSKEQFLETVASGEYS 235

Query: 199 QPQP 202
             QP
Sbjct: 236 WDQP 239


>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 85  NGVSPQFASPDIYNPTGLGQSNVHDILQH--DANAQPSQQAPTL 126
           +G++PQ+  P I+    +G    H   Q+  D   QP   +P++
Sbjct: 94  DGIAPQYLDPQIHRSAAIGSGEWHSGFQYGVDKVFQPLPSSPSM 137


>05_05_0070 +
           22148595-22148907,22148988-22149104,22149196-22149350,
           22149987-22150061,22150179-22150469,22150942-22151292,
           22151390-22151794
          Length = 568

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 70  YPIDFPSASSHAYSMNGVSPQFASPDIYNPTGLGQSNVHDILQHDANA 117
           YP+   S +   Y+    +P F+   + +P+ +G++ + D   HD  A
Sbjct: 499 YPVVSTSGTPPPYATAYATPSFSPAQLSSPSNIGRALLVDRRSHDGRA 546


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 92  ASPDIYNPTGLGQSNVHDILQHDANAQPSQQAPTLQLINGTRAA-ERWDGKSKLERLFDP 150
           ASP  +  +GL + N    L+     +  + + ++  ING +++  +   +S L R+ DP
Sbjct: 411 ASPHRHLVSGLNRVNRCSSLKDGPCPRQPEASTSVDKINGDKSSGNKGSRRSPLRRMLDP 470

Query: 151 IIK 153
           I+K
Sbjct: 471 ILK 473


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,816,473
Number of Sequences: 37544
Number of extensions: 303086
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 4
length of query: 303
length of database: 14,793,348
effective HSP length: 82
effective length of query: 221
effective length of database: 11,714,740
effective search space: 2588957540
effective search space used: 2588957540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)