GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000015-TA|BGIBMGA000015-PA|IPR012464|Protein of unknown
function DUF1676
         (303 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)            29   3.6  
SB_31408| Best HMM Match : ENTH (HMM E-Value=0)                        29   4.7  
SB_6903| Best HMM Match : Cullin (HMM E-Value=0)                       29   6.2  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   6.2  

>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/77 (24%), Positives = 34/77 (44%)

Query: 158  IIEPIATVVYDAMPATFRDLNTATTKSVEAIEEVKTPREFLQPQPRLIAQRKNARKNKPK 217
            II    T V D         N+ +TK     +E++T +   +   + + Q ++ +KN  K
Sbjct: 1823 IIRERETTVADLEAQIIELTNSVSTKEKSVTQEIETIKRDKERADKEMEQLRSNKKNLEK 1882

Query: 218  KFSGIKISLNRLKHNKD 234
              + +K  L+RL    D
Sbjct: 1883 DLTQVKGELSRLGSESD 1899


>SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 160 EPIATVVYDAMPATFRDLNTATTKS-VEAIEEVKTPREFLQPQPRLIAQRKNARKNKPK 217
           + +  +    +P T RD    T  + V ++ +++ P +FLQ   +    R    KNKPK
Sbjct: 254 DSLVKIKIPVLPGTSRDGTQITVGTPVSSLCDIRVPDQFLQVNGKRKRGRPKGSKNKPK 312


>SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)
          Length = 1091

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 200  PQPRLIAQRKNARKNKPKKFSGIKISLNRLKHNK 233
            P+PRLI  RK   K+KP+     KI +++ +H K
Sbjct: 1036 PRPRLIPVRKVHFKSKPRPIPARKIYMSKPRHIK 1069


>SB_31408| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 1080

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 183 KSVEAIEEVKTPREFLQPQPRLIAQRKNARKNKPKKFSGIKISLNRLKHNKDLDD 237
           + +    +VK   E +Q   R+ ++RK A+KN+  K++G+     R  H  D  D
Sbjct: 524 QGINVRHKVKELIELVQDDDRIRSERKRAKKNR-DKYTGVSSENYRDSHYSDRYD 577


>SB_6903| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 430

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 86  GVSPQFASPDIYNPTGLGQS-NVHDILQHDANAQPSQQAPTLQLINGTRAAERWDGKSKL 144
           GV   ++  DI   TG+G+S ++ DI Q     +  +   TLQ +   +A  R   K   
Sbjct: 271 GVGKSYSLEDIKQATGVGESWSIEDIKQ-ATGVEDGELRRTLQSLACGKA--RVIKKRPQ 327

Query: 145 ERLFDPIIKKFRRIIEPIATV---VYDAMPATF-RDLNTATTK-SVEAIEEVKTPREFLQ 199
            RLFD  +     +I  + TV   + D    TF ++      +  +  ++  +TP E + 
Sbjct: 328 VRLFDTSLMAPNIVIRSVNTVSKDIEDGDVFTFNKEFKHKLIRIKINQVQMKETPEENVN 387

Query: 200 PQPRLIAQRKNARKNKPKKFSGIKISLNRLKHNKDL 235
              R+   R+    +  K+   + I  + ++ +K++
Sbjct: 388 TTERVFQDRQYQPTDLKKRIESL-IERDYMERDKEI 422


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 125  TLQLINGTRAAERWDG--KSKLERLFDPIIKKFRRIIEPIATVVYDAMPATFRDLNTATT 182
            TL  I G   AE  +G    + ++L +  + KFR+I EPI  V  +      RD++T   
Sbjct: 1305 TLDKIGGYDIAEEVNGFFTKEADKLINKAVSKFRQIKEPITEVQEE-----LRDISTMVD 1359

Query: 183  KSVEAIEEVKTPREFLQP 200
              ++ +  +K     L P
Sbjct: 1360 TVMDVLINLKPFSNNLSP 1377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,079,220
Number of Sequences: 59808
Number of extensions: 345195
Number of successful extensions: 911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 6
length of query: 303
length of database: 16,821,457
effective HSP length: 82
effective length of query: 221
effective length of database: 11,917,201
effective search space: 2633701421
effective search space used: 2633701421
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)