GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000015-TA|BGIBMGA000015-PA|IPR012464|Protein of unknown
function DUF1676
         (303 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.36 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 125 TLQLINGTRAAERWDGKSKLERLFDPIIKKFRRIIEPI 162
           TL +I      + ++     +RL+D ++  + R+I P+
Sbjct: 15  TLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPV 52


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 126 LQLINGTRAAERWDGKSKLERLFDPIIKKFRRIIEPIA 163
           LQ I    +A    G    +RL+D ++  + R+I P++
Sbjct: 3   LQTIILILSARICHGNPDAKRLYDDLLSNYNRLIRPVS 40


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 142 SKLERLFDPIIKKFRRIIEPI 162
           S+ +RL+D ++  + R+I P+
Sbjct: 19  SEAKRLYDDLLSNYNRLIRPV 39


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 100 TGLGQSNVHDILQHDANAQPSQQAPTLQLINGTRAAE 136
           +G+   N H +LQ ++    +Q   TLQ+I   +  E
Sbjct: 328 SGIACVNEHQVLQRESFDVVAQNEETLQMIVSMKIME 364


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 165 VVYDAMPATFRDLNTATTKSVEAIEE 190
           +VY   P +F+D N      +E I+E
Sbjct: 31  IVYQVYPRSFKDSNGDGIGDIEGIKE 56


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 165 VVYDAMPATFRDLNTATTKSVEAIEE 190
           +VY   P +F+D N      +E I+E
Sbjct: 31  IVYQVYPRSFKDSNGDGIGDIEGIKE 56


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 96  IYNPTGLGQSNVHDILQHDANAQPSQQAPTLQLINGTRAAERWDGKSKLERL 147
           + N + +G  N H  LQ       +Q   TLQ+I   +  +      ++ R+
Sbjct: 322 LVNNSAIGCWNEHQPLQRQNMDMVAQNEKTLQMIISVKIIQNLAYSGRMNRI 373


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 67  YSQYPIDFPSASSHAYSMNGVSPQFASPDIYNP 99
           Y Q P    S SS+  SM     QFA+P   +P
Sbjct: 366 YRQPPTLSESYSSYVNSMYASGAQFATPCTPSP 398


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)

Query: 151 IIKKFRRIIEPIATVVYDAM 170
           II K+ RII P++ ++++A+
Sbjct: 463 IIDKYSRIIFPVSFMLFNAI 482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,602
Number of Sequences: 429
Number of extensions: 3299
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 303
length of database: 140,377
effective HSP length: 57
effective length of query: 246
effective length of database: 115,924
effective search space: 28517304
effective search space used: 28517304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)