GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000015-TA|BGIBMGA000015-PA|IPR012464|Protein of unknown
function DUF1676
         (303 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P...    32   0.55 
At5g35180.1 68418.m04169 expressed protein                             29   3.8  
At2g34357.1 68415.m04206 expressed protein                             28   8.9  

>At5g18820.1 68418.m02236 chaperonin, putative similar to
           SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
           subunit, chloroplast precursor (60 kDa chaperonin alpha
           subunit, CPN-60 alpha)[Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 575

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 202 PRLIAQRKNARKNKPKKFSGIKISLNRLKHNKD 234
           P  I+ R++ ++N+P+KFS ++    R+ + KD
Sbjct: 11  PTTISPRRSGQRNEPRKFSVVRAGAKRILYGKD 43


>At5g35180.1 68418.m04169 expressed protein
          Length = 778

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 84  MNGVSPQFASPDIYNPTGLGQSNVHDILQHDANAQPSQQAPTLQLINGTRAAERWDGKS 142
           +  VS   AS  +  P   G SNV D      +  PSQ   +L+  NG + +  W+  S
Sbjct: 509 LKNVSWAIASLSLKRPKAPGASNVLDASVDPVSIDPSQFQGSLRKGNGDKDSNCWNSPS 567


>At2g34357.1 68415.m04206 expressed protein
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 76   SASSHAYSMNGVSPQFASPDIYNPTGLGQSNVHDILQHDANAQPSQQAPTLQLINGT-RA 134
            S S +AY+    + + AS D+     L       + +   + +P Q+A  ++ ++   + 
Sbjct: 1185 SESGYAYTGKEYASKKASGDLKKKDKLEPYAYWPLDRKMMSRRPEQRAVAVRGMSSVVKM 1244

Query: 135  AERWDGKSKLERLFDPIIKKFRR 157
            A++ +GKS  E L     KKF+R
Sbjct: 1245 AKKMEGKSAAEALATTKFKKFKR 1267


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,424,755
Number of Sequences: 28952
Number of extensions: 250651
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 3
length of query: 303
length of database: 12,070,560
effective HSP length: 81
effective length of query: 222
effective length of database: 9,725,448
effective search space: 2159049456
effective search space used: 2159049456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)