GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000014-TA|BGIBMGA000014-PA|undefined
         (117 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    28   0.44 
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   1.0  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.8  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   3.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   4.1  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    24   5.4  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    24   5.4  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 0.44
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 42  LRQKKAVKIFDLITIEPLATRQARSSQDLWTRFLENH 78
           LR  K++K++   TI PL T+       +WT F E H
Sbjct: 230 LRSVKSLKVYK--TISPLHTQSTDKLYTIWTPFSELH 264


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 15  DVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFD 52
           D+  ++ +DC++   C E+I K L++    + + +I +
Sbjct: 799 DMHFLLNMDCSEFYCCDEEISKDLLIKSLSQNSAEILN 836


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 11  VLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQARSSQDL 70
           +L+ ++     L+ N+N    E    Q ++NLR  K+    D +TI+  +     +S DL
Sbjct: 303 LLINELNRTSFLNSNNNLKLNEAEENQNLLNLRSPKSSGKADNLTIKSSSNIDKVTSNDL 362

Query: 71  W 71
           +
Sbjct: 363 Y 363


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 81  SFDLLDYTFQITPREDNTNALNFEVFESRTA 111
           SF+     FQ +P ED  N  N ++ + R +
Sbjct: 638 SFETSPTVFQTSPEEDKENVNNIKISQPRNS 668


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 54  ITIEPLATRQARSSQDLWTRFLENHAVSFDLLDYTFQITPREDN 97
           + + PL     R+S   W+ F   H++  ++      I P +DN
Sbjct: 480 LPVLPLVCVFIRTSMQTWSMFRSTHSMKQEIAKSIGTIFPTKDN 523


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 41  NLRQKKAVKIFDLITIEPLATRQARSSQDLWTRFL 75
           NLR KKA    +   + P   + A +S ++ T FL
Sbjct: 612 NLRIKKATTEVEFTEVTPAEDQNALASSNIETEFL 646


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 31  IEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQARSSQDLWTRFLENHAVS-FDLLDYTF 89
           ++ I K L+  L+   A    DL  I P  T   R+    W+ FL +HA S  + LD   
Sbjct: 129 LDIIQKSLVGLLQVFVARAESDLDIIMPGYTHLQRAQPIRWSHFLLSHAFSILNDLDRLK 188

Query: 90  QITPR 94
           QI  R
Sbjct: 189 QIYSR 193


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,985
Number of Sequences: 5004
Number of extensions: 17135
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 7
length of query: 117
length of database: 2,362,478
effective HSP length: 65
effective length of query: 52
effective length of database: 2,037,218
effective search space: 105935336
effective search space used: 105935336
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 48 (23.4 bits)