Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000014-TA|BGIBMGA000014-PA|undefined
(117 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1820 + 40120861-40120863,40122484-40122612,40122710-401228... 30 0.41
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320... 28 1.7
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 28 1.7
08_02_1439 + 27111561-27112103 27 3.8
04_04_1576 - 34551095-34552645 27 3.8
11_01_0557 + 4394754-4396040 26 6.7
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732 26 6.7
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 26 6.7
>01_06_1820 +
40120861-40120863,40122484-40122612,40122710-40122895,
40123679-40123867,40124229-40124563,40124977-40125400
Length = 421
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 1 MSPLVLLLAFVLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKA 47
++P L+ FVLV AIV LD +N + ++ P++++V+ + +A
Sbjct: 19 VAPPAALIFFVLVFAGGAIVTLDHKENLSILQLRPREMVVSETETRA 65
>12_01_0404 +
3200787-3200898,3201016-3201091,3201442-3201544,
3202109-3202160,3202239-3202333,3202703-3202768,
3202910-3203419,3203598-3203756,3204022-3204321,
3204867-3205193,3205548-3205754,3205978-3206076,
3206193-3206251,3206294-3206639
Length = 836
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 32 EQIPKQLIVNLRQKKAVKIFDLITIEPLATRQARSSQDLWTRFLENHAVSFDL 84
+ + K I+NLR K K TIEPL ++S DL ++ +N ++F L
Sbjct: 269 DDVNKGKIMNLRSAKKWK-----TIEPLVKSYLQNSLDLLSQLTDNQILAFVL 316
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 16 VRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQARSSQDLWTRFL 75
+R I D N TC+ ++PK +LR++K ++ + + RQA + L
Sbjct: 103 LRCIQTRDHNFATTCVCRVPK----HLREEKVAELEEQVQAVTAQRRQAERAATEVLGIL 158
Query: 76 ENHAVSFDLLD 86
E+H +L D
Sbjct: 159 ESHGFGGNLSD 169
>08_02_1439 + 27111561-27112103
Length = 180
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 8 LAFVLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDL--ITIEPLATRQAR 65
L +VGD R + N T + K L + R +A + L I ++ A
Sbjct: 24 LPSAVVGDARFVARTCKRTNHT---ECVKMLSADRRSARATTVHQLAGIAVDIAAATVKS 80
Query: 66 SSQDLWTRFLENHAVSFDL 84
S+ ++ +FLENH +L
Sbjct: 81 SAAAVYGKFLENHGQVLEL 99
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 41 NLRQKKAVKIFDLITIEPLATRQARSSQDLWT----RFLENHAVSFDLLDYTFQITPRED 96
N + ++AVK+FD + +E +A A L+ F++ + FD + F + P ED
Sbjct: 424 NGQAREAVKVFDDMLLEGMAPNHAAFYSVLYACSQGGFVDEGWIYFDAMADKFGVEPGED 483
Query: 97 N 97
+
Sbjct: 484 H 484
>11_01_0557 + 4394754-4396040
Length = 428
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 4 LVLLLAFVLVGDVRAIVELDCN 25
LVLLL+FVL + A+V LD N
Sbjct: 74 LVLLLSFVLWSSICAVVPLDPN 95
>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
Length = 1050
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 72 TRFLENHAVSFDLLDYTFQITPREDNTNALNF 103
+R+LENH ++ + LD+ +I+ +D NAL++
Sbjct: 847 SRYLENHNIAIE-LDWMRRISIVKDVANALSY 877
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 26.2 bits (55), Expect = 6.7
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 71 WTRFLENHAVSFDLLDYTFQITPREDNTN 99
W ++++H++ F+ + P+++N+N
Sbjct: 1380 WNLYVQDHSIDFNRFSVIYPPVPKQNNSN 1408
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.137 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,499
Number of Sequences: 37544
Number of extensions: 89255
Number of successful extensions: 248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 9
length of query: 117
length of database: 14,793,348
effective HSP length: 73
effective length of query: 44
effective length of database: 12,052,636
effective search space: 530315984
effective search space used: 530315984
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)
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