GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000014-TA|BGIBMGA000014-PA|undefined
         (117 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.98 
SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.9  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         26   9.1  
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.1  
SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)                 26   9.1  

>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 13  VGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQARSSQDLW 71
           VG +     +  + NA  ++  P+++ V LR +    + DL+  E +A     SSQ+ W
Sbjct: 432 VGKLDGEYTIRLDTNAQPVQHAPRRVAVALRPQLKKTLNDLVDKEIIAPLYGSSSQERW 490


>SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 36  KQLIVNLRQKKAVKIFDLITIEPLATRQARSSQDLWTRFLENHAV 80
           +QL+ + R+    K+ D   I   ATRQ   S  + T+F+  + V
Sbjct: 72  RQLLQSARRVNDYKVRDASIITKCATRQLLQSASIITKFVNYYKV 116


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 24   CNDNATCIEQIPKQLI 39
            C +NATC++Q+ +Q +
Sbjct: 1072 CKNNATCVDQVGEQFV 1087


>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 23  DCNDNATCIEQIPKQLIVNLRQKKAVKI---FDLITIEPLATRQARSSQDLWTRFLENHA 79
           +  ++A+C+ ++PKQ I  +    A K       IT  P++T    +     +   EN+ 
Sbjct: 26  ESQNDASCLAKMPKQQIARICHSSASKEGTGSRTITGYPVSTPSEPTPDSASSTVGENNQ 85

Query: 80  VSFDLLDYT--FQITPREDNTNALNFEVFESRTAK 112
              D  + T  F+IT  E    A N E ++ R AK
Sbjct: 86  TDQDEDEETNSFKITAEE---IAKNLEKYKKRPAK 117


>SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)
          Length = 486

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 3   PLVLLLAFVLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITI 56
           PLV   A  LV ++  I   D ND  +C   +   L   L    AV + +++++
Sbjct: 387 PLVATQAMKLVDEILRIPPPDINDEQSCPSHLTLLLSAMLLDTPAVVLQEVLSV 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,596
Number of Sequences: 59808
Number of extensions: 109521
Number of successful extensions: 278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 16,821,457
effective HSP length: 73
effective length of query: 44
effective length of database: 12,455,473
effective search space: 548040812
effective search space used: 548040812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)