GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000014-TA|BGIBMGA000014-PA|undefined
         (117 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    32   0.091
Z93396-8|CAB07710.2|  333|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AL033509-2|CAA22060.2|  333|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    27   2.6  
L23651-13|AAA27957.3|  251|Caenorhabditis elegans Hypothetical p...    26   7.9  

>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 3   PLVLLLAFVLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATR 62
           PL LLL  V + D+ A   ++  +N   ++ + K  +++ R K    I D+I + P  + 
Sbjct: 149 PLNLLLDLVNILDLIAHTRIEYVENGVAVKNLSK--LMHHRLKSTFFILDVIAVVPAESL 206

Query: 63  QARSSQDLWTRFLENHAVSFDLLDYTFQITPREDNTNA 100
                   W+R +      + L D++ Q   R  + +A
Sbjct: 207 HIFGDSFFWSR-INRLTKCYRLFDFSTQTDTRTTSPHA 243


>Z93396-8|CAB07710.2|  333|Caenorhabditis elegans Hypothetical
           protein ZC15.2 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 79  AVSFDLLDYTFQITPREDNTNALNFEVFESRTAKGEQLF 117
           ++S DL+DYT+ ++   D+T +L++ +     A G  +F
Sbjct: 116 SISTDLVDYTYSVSYGSDDTWSLSYNLTGRVCADGWSMF 154


>AL033509-2|CAA22060.2|  333|Caenorhabditis elegans Hypothetical
           protein ZC15.2 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 79  AVSFDLLDYTFQITPREDNTNALNFEVFESRTAKGEQLF 117
           ++S DL+DYT+ ++   D+T +L++ +     A G  +F
Sbjct: 116 SISTDLVDYTYSVSYGSDDTWSLSYNLTGRVCADGWSMF 154


>Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical
           protein T14G10.1 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/69 (23%), Positives = 28/69 (40%)

Query: 10  FVLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQARSSQD 69
           ++L GDV  + ++  ND      + P +L     +K A  +F      P+    A   +D
Sbjct: 403 WLLGGDVAVVQKIQFNDGLDKYRKTPNELRAIFAEKNADAVFAFQLRNPIHNGHALLMRD 462

Query: 70  LWTRFLENH 78
              + L  H
Sbjct: 463 TREKLLAEH 471


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 52  DLITIEPLATRQARSSQDLWTRFLENHAVSFDLLDYTFQITPREDNTNALNFEVFESR 109
           +++T+  L ++Q RS  +L   F+EN+ + ++L +    +    DN   L  E+ + R
Sbjct: 126 EMLTV--LMSKQIRSVSELEDYFVENNNLEYELTETKNFLQANMDNCQKLQQEITQMR 181


>L23651-13|AAA27957.3|  251|Caenorhabditis elegans Hypothetical
           protein C29E4.8 protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 48  VKIFDLITIEPLATRQARSSQDLWTRFLENHAVSFDLLDY 87
           V + D +T EPL  R   + + L  R ++ H ++  L+DY
Sbjct: 172 VPMKDDLTGEPLIRRSDDNEETLRKRLVQYHQMTVPLVDY 211


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,212
Number of Sequences: 27539
Number of extensions: 91313
Number of successful extensions: 302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 12,573,161
effective HSP length: 72
effective length of query: 45
effective length of database: 10,590,353
effective search space: 476565885
effective search space used: 476565885
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)