GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000014-TA|BGIBMGA000014-PA|undefined
         (117 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61050.1 68416.m06832 calcium-dependent lipid-binding protein...    29   0.61 
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ...    29   0.80 
At3g03570.1 68416.m00360 expressed protein similar to hypothetic...    29   0.80 
At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r...    27   2.4  
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    26   5.6  
At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar t...    26   5.6  
At5g35520.1 68418.m04224 kinetochore protein-related contains Pf...    26   7.5  
At5g27580.1 68418.m03303 MADS-box family protein contains Pfam p...    26   7.5  
At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase fa...    26   7.5  
At1g76970.1 68414.m08962 VHS domain-containing protein / GAT dom...    25   9.9  

>At3g61050.1 68416.m06832 calcium-dependent lipid-binding protein,
           putative strong similarity to CLB1 [Lycopersicon
           esculentum] GI:2789434; contains Pfam profile PF00168:
           C2 domain
          Length = 510

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 37  QLIVNLRQKKAVKIFDLI-TIEPLATRQARSSQDLWTRFLENHAVSFDLLDYTFQITPRE 95
           +LIV + +   +K  +LI   +P AT   R      T+ +EN+     + D TF++   +
Sbjct: 264 KLIVTVVKATNLKNKELIGKSDPYATIYIRPVFKYKTKAIENNLNP--VWDQTFELIAED 321

Query: 96  DNTNALNFEVFESRTAKGEQL 116
             T +L  EVF+    + E+L
Sbjct: 322 KETQSLTVEVFDKDVGQDERL 342


>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 304

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 6   LLLAFVLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQAR 65
           +L  FV   +V    + D N  A     + K+++V+L ++ +++    ITIE  A    +
Sbjct: 67  VLARFVHTSEVVGGPKPDLNKEAEQRTTVKKKIVVDLEEENSIESESDITIEESALCLLQ 126

Query: 66  SSQDLWTRFLENHAVSFDLLDYTFQITPREDNTNALNFEVFES 108
              D  + +L+N       +D       R+D  N +  +  E+
Sbjct: 127 MKDDNMSEYLQN----LKSIDSLVSTRKRKDTENYIEIDSDEN 165


>At3g03570.1 68416.m00360 expressed protein similar to hypothetical
           protein GB:CAB38918 [Arabidopsis thaliana]
          Length = 607

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 28  ATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQARSSQDLWTRFLENHAVSFDLLDY 87
           AT  E++P   I+ L    + KI   I+  PL+ R A S ++   R  E+H +  +  + 
Sbjct: 311 ATICEELPSHGILLLYLSASGKIGQ-ISSSPLSARSATSVEENILRDFESHTIKQE-TEP 368

Query: 88  TFQITP 93
           + QITP
Sbjct: 369 SLQITP 374


>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
           protein-related identical to cDNA bHLH transcription
           factor (bHLH gamma gene) GI:32562999; weak similarity to
           bHLH transcription activator anthocyanin 1 [Petunia x
           hybrida] GI:10998404
          Length = 720

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 81  SFDLLDYTFQITPREDNTNALNFEVFESRTAKGEQ 115
           S+  LD TFQ T R D  ++ + EVF+    +G +
Sbjct: 325 SYPRLDSTFQATSRTDKESSYHNEVFQLSENQGNK 359


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 8   LAFVLVGDVRAIVELDCNDNATCIEQIPKQLIVNLRQKKAVKIFDLITIE 57
           +A  +V ++  +V   C D A  +E+I + +   L   +A    DL+ +E
Sbjct: 141 VALCMVANLSGMVSRYCADEAMMLEEIVEVISSRLASMQATSFEDLVGME 190


>At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar to
          SP|P46656 Adrenodoxin, mitochondrial precursor (Adrenal
          ferredoxin) from Mus musculus, SP|P10109 Adrenodoxin,
          mitochondrial precursor (Hepatoredoxin) from Homo
          sapiens, SP|P29330 Adrenodoxin from Ovis aries;
          contains Pfam profile: PF00111 2Fe-2S iron-sulfur
          cluster binding domains; identical to cDNA GI: 28192430
          Length = 197

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)

Query: 58 PLATRQARSSQDLWTRFLENH 78
          P+  RQAR+SQ+ W  FL++H
Sbjct: 43 PVVPRQARTSQEAW--FLKSH 61


>At5g35520.1 68418.m04224 kinetochore protein-related contains Pfam
           PF05859: Mis12 protein
          Length = 285

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 55  TIEPLATRQARSSQDLWTRFLENHAVSFDLLDYTFQIT 92
           ++E L TR+ ++S+    + L+NH   F  + + + ++
Sbjct: 189 SVERLKTRRMKASESAKVKRLKNHGKEFSAMTFDYVVS 226


>At5g27580.1 68418.m03303 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL89
          Length = 223

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 57  EPLATRQARSSQDLWTRFLENHAVSFDLLDY 87
           EPL T  + + QDL T  L NH   + +  Y
Sbjct: 177 EPLVTGVSNTEQDLSTSPLSNHQSKYSVFVY 207


>At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase SP|Q96330
           {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida};
           contains Pfam profile PF03171: oxidoreductase,
           2OG-Fe(II) oxygenase family
          Length = 357

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 11  VLVGDVRAIVELDCNDNATCIEQIPKQLIVNL 42
           +L+   + +  +DCN N  C+  I   LIV L
Sbjct: 238 ILLQSSKGLQIMDCNKNWVCVPYIEGALIVQL 269


>At1g76970.1 68414.m08962 VHS domain-containing protein / GAT
          domain-containing protein weak similarity to
          HGF-regulated tyrosine kinase substrate [Mus musculus]
          GI:1089781; contains Pfam profiles PF00790: VHS domain,
          PF03127: GAT domain
          Length = 446

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 25 NDNATCIEQIPKQLIVNLRQKKAVKIFDLITIEPLATRQA 64
          ND A C E+    +++       +++ DLI ++P   ++A
Sbjct: 3  NDAAACAERATNDMLIGPDWAINIELCDLINMDPSQAKEA 42


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.137    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,720
Number of Sequences: 28952
Number of extensions: 81833
Number of successful extensions: 270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 10
length of query: 117
length of database: 12,070,560
effective HSP length: 72
effective length of query: 45
effective length of database: 9,986,016
effective search space: 449370720
effective search space used: 449370720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 53 (25.4 bits)