GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000013-TA|BGIBMGA000013-PA|IPR012464|Protein of unknown
function DUF1676
         (239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    29   0.60 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   2.4  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   7.4  

>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 79  EPLPDEPRARE---NQVDLRLLDGVADFLENFVIQL 111
           +PL D+  A +   N+V+LR +DGV D + +F ++L
Sbjct: 585 DPLKDKHEASDTSMNRVELRQIDGVLDRMADFFLEL 620


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 24  SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 57
           S MG+LK   DD++ +   ++ LR+    S  ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 20  DVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSFE 79
           DVF  +  VL   +D+NV +       R  E+V++  ++ LI     +   + R    F+
Sbjct: 484 DVFDRIRFVLNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLIT-TKDVAFVTDRVNFEFQ 542

Query: 80  PLPDEPRARENQVDLRLLDGVADFLENFVIQLRLPKGAIESAK 122
              D  R   N++  RL D   D+       LR+     ES K
Sbjct: 543 RYQDTHRQDLNRILNRLTDSHIDWANR---NLRIWNSVQESLK 582


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,672
Number of Sequences: 5004
Number of extensions: 21235
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 2,362,478
effective HSP length: 71
effective length of query: 168
effective length of database: 2,007,194
effective search space: 337208592
effective search space used: 337208592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)