GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000013-TA|BGIBMGA000013-PA|IPR012464|Protein of unknown
function DUF1676
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0504 - 19771191-19772134,19772210-19774892                       29   4.4  
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    28   5.8  

>12_02_0504 - 19771191-19772134,19772210-19774892
          Length = 1208

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 36 NVALCLKEKALRYVENVSNSRELNLIDGVSLI 67
          N+A+ L +KA  Y++ V+  R+  L+ G+S++
Sbjct: 15 NLAMPLVDKAFSYMDGVNQDRKEKLLQGLSVV 46


>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 16  NNDEDVFRSV-MGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRS 74
           N+D ++   + +  ++ CSDD+ ++   +   R +  + N     ++D + ++   SP S
Sbjct: 462 NHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTSVSP-S 520

Query: 75  ARSFEPLPDEPRARENQV 92
           A     +  E R R  Q+
Sbjct: 521 ATIMRKIGTETRKRSIQL 538


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.136    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,326,186
Number of Sequences: 37544
Number of extensions: 138511
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 2
length of query: 239
length of database: 14,793,348
effective HSP length: 80
effective length of query: 159
effective length of database: 11,789,828
effective search space: 1874582652
effective search space used: 1874582652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)