GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000013-TA|BGIBMGA000013-PA|IPR012464|Protein of unknown
function DUF1676
         (239 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      28   7.9  

>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 112 RLPKGAIESAKRSLEEGRG 130
           RL KG+IE  KR+ E+G+G
Sbjct: 121 RLNKGSIEQGKRATEQGKG 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.136    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,912,780
Number of Sequences: 59808
Number of extensions: 159183
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 4
length of query: 239
length of database: 16,821,457
effective HSP length: 80
effective length of query: 159
effective length of database: 12,036,817
effective search space: 1913853903
effective search space used: 1913853903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)