GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000013-TA|BGIBMGA000013-PA|IPR012464|Protein of unknown
function DUF1676
         (239 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    27   9.1  

>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 57  ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 104
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 602 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 652


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 57  ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 104
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 604 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 654


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 40  CLKEKALRYVENVSNSR----ELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQ 91
           CL +  L YV +  +++     + +    ++I QGSP +++  EP P +P    N+
Sbjct: 96  CLFQACLAYVHSSKSAKMSQPSVIIPQQNAIIPQGSPEASQQREPTPPKPEEPPNE 151


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 57  ELNLIDGVSLIGQGSPRSARSFEP----LPDEPRARENQVDLRLLDGVADFLENFVIQLR 112
           ELN   G+  + + S    +++E     LP E RA  N++    ++G + F+ NF I + 
Sbjct: 69  ELNYTFGMPPVTEESENMPQNYETVVELLPGEERAPINKLTEFPIEGGSLFVTNFRIVVI 128

Query: 113 LPKGAIESAKRSL 125
           L    +E A R L
Sbjct: 129 LKDKEVEEALRFL 141


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 57  ELNLIDGVSLIGQGSPRSARSFEP----LPDEPRARENQVDLRLLDGVADFLENFVIQLR 112
           ELN   G+  + + S    +++E     LP E RA  N++    ++G + F+ NF I + 
Sbjct: 65  ELNYTFGMPPVTEESENMPQNYETVVELLPGEERAPINKLTEFPIEGGSLFVTNFRIVVI 124

Query: 113 LPKGAIESAKRSL 125
           L    +E A R L
Sbjct: 125 LKDKEVEEALRFL 137


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 57  ELNLIDGVSLIGQGSPRSARSFEP----LPDEPRARENQVDLRLLDGVADFLENFVIQLR 112
           ELN   G+  + + S    +++E     LP E RA  N++    ++G + F+ NF I + 
Sbjct: 69  ELNYTFGMPPVTEESENMPQNYETVVELLPGEERAPINKLTEFPIEGGSLFVTNFRIVVI 128

Query: 113 LPKGAIESAKRSL 125
           L    +E A R L
Sbjct: 129 LKDKEVEEALRFL 141


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.136    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,648,169
Number of Sequences: 27539
Number of extensions: 114018
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 6
length of query: 239
length of database: 12,573,161
effective HSP length: 79
effective length of query: 160
effective length of database: 10,397,580
effective search space: 1663612800
effective search space used: 1663612800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)