Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
         (497 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   4.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   4.9  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   4.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   4.9  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   8.5  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 204 AAPHHHEEHPGYSYEPASSGGW--GRQATDAQSLAYAVHLVFDQ 245
           +A HHH +    ++  A+SG       +T + +LA AV    D+
Sbjct: 6   SAAHHHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDK 49


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 204 AAPHHHEEHPGYSYEPASSGGW--GRQATDAQSLAYAVHLVFDQ 245
           +A HHH +    ++  A+SG       +T + +LA AV    D+
Sbjct: 65  SAAHHHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDK 108


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 204 AAPHHHEEHPGYSYEPASSGGW--GRQATDAQSLAYAVHLVFDQ 245
           +A HHH +    ++  A+SG       +T + +LA AV    D+
Sbjct: 6   SAAHHHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDK 49


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 204 AAPHHHEEHPGYSYEPASSGGW--GRQATDAQSLAYAVHLVFDQ 245
           +A HHH +    ++  A+SG       +T + +LA AV    D+
Sbjct: 65  SAAHHHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDK 108


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 8/44 (18%)

Query: 250 MRFLILFLSVVAVVYC-------GPVNQDENLA-RALLEPFVKC 285
           M+F I FL ++  V+C         +N DE LA   LL+ +  C
Sbjct: 1   MKFFIAFLMLLGAVWCEQYTTKYDNINVDEILASERLLKNYFNC 44


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,210
Number of Sequences: 317
Number of extensions: 2662
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 497
length of database: 114,650
effective HSP length: 60
effective length of query: 437
effective length of database: 95,630
effective search space: 41790310
effective search space used: 41790310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)