Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    30   0.64 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    28   2.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   3.4  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   3.4  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   4.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   7.9  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    27   7.9  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 262 VVYCGPVNQDENLARAL---LEPFVKCQNSDYYLCGKEYVLKAVEKI 305
           V+YCG V  + N  R L    EPF K  N+  YLC  ++  +A+ ++
Sbjct: 91  VIYCGEVIMEGNKTRKLNIDFEPF-KPINTSQYLCDNKFHTEALAEL 136


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/65 (21%), Positives = 31/65 (47%)

Query: 68  SLVNIGSARSARSYEPLAEDPKARELQLDERIADNMGDFLENHVIQLRLSEPEAESRSLD 127
           S+ ++G  ++    +   E P+ ++++ ++   +  G F+E    Q   S+P   S  + 
Sbjct: 419 SVSSVGKEQNHTEKQVAIETPEQQKVEKEDEHLNLQGSFIEESTKQPISSKPSTSSPDMT 478

Query: 128 DEARG 132
           D A G
Sbjct: 479 DAATG 483


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 7   LLALTASVQCNPLKENSISENLVGVISECIERDTSLCIKEKALKFTERLAFSKDMNIFD 65
           LL L AS     L + S S +L  +++     ++S  IKE       +L F+ + N F+
Sbjct: 918 LLTLKASGFSERLGDRSYSSSLASILAHTFSVNSSENIKELTKSILYKLRFAIEQNYFE 976


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 33  SECIERDTSLCIKEKALKFTERLAFSKDMNIFDGMSLVNIG---SARSARSYEPLAEDPK 89
           S  IE +T L +KEK  K    +A     +  +G+S        +++ A+     A   +
Sbjct: 24  STAIENETKLSVKEKVAKEIANIALRSGGSESNGISKKKKNKKQTSKKAKDKLAAALKAQ 83

Query: 90  ARELQLDERIADNM 103
           ARE +LD +I+ ++
Sbjct: 84  AREERLDTKISKSL 97


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 56  AFSKDMNIFDGMSLVNIGSARSARSYEPLA-EDPKARELQLDERIADNMGDFLENH 110
           AF+  + + D      +  A ++ +Y+  A +DP  R+L+ DER A  + +   +H
Sbjct: 51  AFNALLGLSDPQVAEEMEQAETSYAYDTAAHDDPVQRQLEEDERCARELANRYNSH 106


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 161 GIIAFVAVKAVFLGKIAFAMSAFQLIRKLL 190
           GI AFV+    +LG  +F+   FQL+  ++
Sbjct: 84  GIFAFVSFTTQYLGIYSFSFQPFQLLNVII 113


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 216 SYEPASSGGWGRQATDAQSLAYAVHLVFDQPIGEMRFLILFLSVVAVVYCGPVNQDENLA 275
           S   ++SG    +A D  SLA    L  D+P GE     LF ++         N D++  
Sbjct: 287 SNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYK-------NADDDTR 339

Query: 276 RALLEPFVK 284
           RA+++ + +
Sbjct: 340 RAMMKSYTE 348


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,481
Number of Sequences: 5004
Number of extensions: 54821
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 8
length of query: 497
length of database: 2,362,478
effective HSP length: 76
effective length of query: 421
effective length of database: 1,982,174
effective search space: 834495254
effective search space used: 834495254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)