Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
         (497 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    29   0.089
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 29.1 bits (62), Expect = 0.089
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 298 VLKAVEKIRTLRTLNIIDGVTLLNNNPKESRSLETLSSEPAV 339
           +LK    I T  T N++     +  NPKE   L  L+S+PAV
Sbjct: 817 LLKRFLDITTPPTPNLLRYFASIATNPKEQAQLNLLASDPAV 858


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 302 VEKIRTLRTLNIIDGVTLLNNN 323
           ++ IR LR  + +DGVTLL +N
Sbjct: 144 LQLIRNLRQSSALDGVTLLADN 165


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 366 GPEVEESRAIDDVEEGR 382
           GP+V E +  D+++EG+
Sbjct: 207 GPKVPEKKKEDEIDEGK 223


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,091
Number of Sequences: 429
Number of extensions: 3017
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 497
length of database: 140,377
effective HSP length: 60
effective length of query: 437
effective length of database: 114,637
effective search space: 50096369
effective search space used: 50096369
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)