GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    33   0.69 
11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158           29   8.5  
10_08_0027 - 14259577-14259611,14260225-14260299,14260400-142605...    29   8.5  

>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 32.7 bits (71), Expect = 0.69
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 82  EPLAEDPKARELQLDERIADNMGDFLENHVIQLRLSEPEAESRSLDDE 129
           EP  +D   +++ L    +DN  ++L    +QL L + EA++R  DD+
Sbjct: 59  EPAGKDHSVQKMVLGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDD 106


>11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158
          Length = 425

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 204 AAPHHHEEHPGYSYEPASSGGWGRQATDAQSLAYAVH 240
           A  HHHE H G  Y   +   +G+ AT  +  A+A H
Sbjct: 326 ARDHHHEHHGGVGYSLFAPAPYGQFAT--EQFAFAGH 360


>10_08_0027 -
           14259577-14259611,14260225-14260299,14260400-14260528,
           14261570-14261669
          Length = 112

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 253 LILFLSVVAVVYCGPVNQDENLAR 276
           L+L L VVA V  G  N DE LAR
Sbjct: 9   LLLLLGVVATVAAGECNDDEELAR 32


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,980,847
Number of Sequences: 37544
Number of extensions: 322616
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 3
length of query: 497
length of database: 14,793,348
effective HSP length: 85
effective length of query: 412
effective length of database: 11,602,108
effective search space: 4780068496
effective search space used: 4780068496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)