GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     31   2.1  
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              29   8.6  

>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 70  VNIGSARSARSYEPLAEDPKARELQLDERIADNMGDFLENHVIQLRLSEPE 120
           +NI     A++YE LA+  K + ++++ +  +++GD + N    +R  E E
Sbjct: 170 INIKHGVEAKNYEDLAKAEKLKPMEVELKRLEDLGDAIVNDFAYMRQREQE 220


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 172 FLGKIAFAMSAFQLIRKLLNKNQXXXXXXXXYAAPHHHEEHPGYSYEPASSGGWGRQATD 231
           F+G     MS    ++ L+  ++         A    H+EH GY    AS  G+ + + D
Sbjct: 331 FIGDFRDHMSFINEMKVLIMADELAKDVAGGEALLERHQEHKGYI--DASEDGFNKFSDD 388

Query: 232 AQSLAYAVHLVFDQ 245
            Q L  A H   D+
Sbjct: 389 GQGLIAADHYAKDE 402


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 306 RTLRTLNIIDGVTLLNNNPKESRSLETLSSEPA 338
           RTL TL  I   TLL  NP  SR+L TL+  P+
Sbjct: 299 RTLLTLTPIPSRTLLTLNPIPSRTLLTLTPIPS 331



 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 306 RTLRTLNIIDGVTLLNNNPKESRSLETLSSEPA 338
           RTL TLN I   TLL   P  SR+L TL+  P+
Sbjct: 310 RTLLTLNPIPSRTLLTLTPIPSRTLITLTPIPS 342



 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 306 RTLRTLNIIDGVTLLNNNPKESRSLETLSSEPA 338
           RTL TL  I   TLL  NP  SR+L TL+  P+
Sbjct: 354 RTLLTLTPIPSRTLLTLNPIPSRNLLTLTPIPS 386


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,450,323
Number of Sequences: 59808
Number of extensions: 369322
Number of successful extensions: 1101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 37
length of query: 497
length of database: 16,821,457
effective HSP length: 85
effective length of query: 412
effective length of database: 11,737,777
effective search space: 4835964124
effective search space used: 4835964124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)