GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
         (497 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    30   0.16 
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           27   1.2  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         27   1.5  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    26   2.7  

>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 270 QDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKIRT 307
           + +NL+  LL+ F +C   DY + G+ +V +AV +I T
Sbjct: 191 EGQNLSNQLLDIFKQCSTDDYAVAGR-FVSEAVNEIFT 227


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 203  YAAPHHHEEHPGYSYEPASSGGWGRQATDAQSLAYAV 239
            Y    HH+ H    +E  ++  +GR+ATD +   YAV
Sbjct: 1279 YNTTQHHQTH----HERRTTADFGRKATDGRQHEYAV 1311



 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 189  LLNKNQXXXXXXXXYAAPHHHEEHPGYSYEPAS---SGGWGRQATD 231
            LL+           +  PHHH    G S  P      GG G+  +D
Sbjct: 1386 LLSSTTSTTNFSYQHPHPHHHHNGSGRSKPPGPEGVGGGGGKSPSD 1431


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 204 AAPHHHEEHPGYSYEPASSGGWGRQATDAQSLAYAVHLVFDQPIG 248
           AA HHH  HP + + P  +G     +   Q L   VH +   PIG
Sbjct: 154 AAMHHHHHHP-HHHHPGLTGLMQAPSQQQQHL-QPVHPLAFHPIG 196


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 207 HHHEEHPGYSYEPASSGGWGRQATDAQS-LAYAVHLVFDQPI 247
           HHH  H  +      +GG G    +A   LA  +H +   PI
Sbjct: 122 HHHHHHHHHGNNGGGNGGGGGSGGNAHDHLADGLHSIPSPPI 163


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 355,918
Number of Sequences: 2123
Number of extensions: 11507
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 7
length of query: 497
length of database: 516,269
effective HSP length: 67
effective length of query: 430
effective length of database: 374,028
effective search space: 160832040
effective search space used: 160832040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)