Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
(497 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical p... 32 1.1
AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein. 32 1.1
Z48045-8|CAI46557.1| 331|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 29 10.0
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 29 10.0
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 29 10.0
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 29 10.0
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 29 10.0
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 29 10.0
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 29 10.0
U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical p... 29 10.0
>Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical
protein C50F4.11 protein.
Length = 679
Score = 31.9 bits (69), Expect = 1.1
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 19 LKENSISENLVGVISECIERDTSLCIKEKALKFTERLAFSKDMNIFDGMSLVNIGSARSA 78
L ENS+ ++ + V S ER + + L+F ++ + + F + + IG A +
Sbjct: 300 LLENSVLKDRLNVSSGRAERSMIFEERNRTLEFEKKALHKQLDSTFSEIEAIRIGQAGNL 359
Query: 79 RSYE---PLAEDPKARELQLDERI 99
+ + P + D A++LQL +RI
Sbjct: 360 FNIDEKIPSSSDNSAKQLQLIDRI 383
>AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein.
Length = 679
Score = 31.9 bits (69), Expect = 1.1
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 19 LKENSISENLVGVISECIERDTSLCIKEKALKFTERLAFSKDMNIFDGMSLVNIGSARSA 78
L ENS+ ++ + V S ER + + L+F ++ + + F + + IG A +
Sbjct: 300 LLENSVLKDRLNVSSGRAERSMIFEERNRTLEFEKKALHKQLDSTFSEIEAIRIGQAGNL 359
Query: 79 RSYE---PLAEDPKARELQLDERI 99
+ + P + D A++LQL +RI
Sbjct: 360 FNIDEKIPSSSDNSAKQLQLIDRI 383
>Z48045-8|CAI46557.1| 331|Caenorhabditis elegans Hypothetical
protein C41C4.10 protein.
Length = 331
Score = 31.5 bits (68), Expect = 1.4
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 306 RTLRTLNIIDGVTLLNNNPKESRSLETLSSEPAVRTKQVNEK-LWE 350
R L L++ID TL +N K SLE L+S A V +K LWE
Sbjct: 31 RYLHCLDVIDPRTLFASNKKLEESLELLNSFKAGTATNVPDKSLWE 76
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 259 VVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKI 305
VVAV GP ++ A A +P + D L GKE+ +KA E +
Sbjct: 3889 VVAVNKAGPGQPSDSSAAATAKPMHEAPKFDLDLDGKEFRVKAGEPL 3935
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 259 VVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKI 305
VVAV GP ++ A A +P + D L GKE+ +KA E +
Sbjct: 4418 VVAVNKAGPGQPSDSSAAATAKPMHEAPKFDLDLDGKEFRVKAGEPL 4464
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 259 VVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKI 305
VVAV GP ++ A A +P + D L GKE+ +KA E +
Sbjct: 4099 VVAVNKAGPGQPSDSSAAATAKPMHEAPKFDLDLDGKEFRVKAGEPL 4145
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 259 VVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKI 305
VVAV GP ++ A A +P + D L GKE+ +KA E +
Sbjct: 3889 VVAVNKAGPGQPSDSSAAATAKPMHEAPKFDLDLDGKEFRVKAGEPL 3935
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 259 VVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKI 305
VVAV GP ++ A A +P + D L GKE+ +KA E +
Sbjct: 4418 VVAVNKAGPGQPSDSSAAATAKPMHEAPKFDLDLDGKEFRVKAGEPL 4464
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 259 VVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKI 305
VVAV GP ++ A A +P + D L GKE+ +KA E +
Sbjct: 4099 VVAVNKAGPGQPSDSSAAATAKPMHEAPKFDLDLDGKEFRVKAGEPL 4145
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 259 VVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKI 305
VVAV GP ++ A A +P + D L GKE+ +KA E +
Sbjct: 3308 VVAVNKAGPGQPSDSSAAATAKPMHEAPKFDLDLDGKEFRVKAGEPL 3354
>U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical
protein C33G8.3 protein.
Length = 142
Score = 28.7 bits (61), Expect = 10.0
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 250 MRFL-ILFLSVVAVVYCGPVNQD 271
MR L IL L +V VVYC P+N+D
Sbjct: 1 MRTLPILLLVIVGVVYCYPLNED 23
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,634,267
Number of Sequences: 27539
Number of extensions: 295428
Number of successful extensions: 717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 12
length of query: 497
length of database: 12,573,161
effective HSP length: 84
effective length of query: 413
effective length of database: 10,259,885
effective search space: 4237332505
effective search space used: 4237332505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -