GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000012-TA|BGIBMGA000012-PA|IPR012464|Protein of unknown
function DUF1676, IPR000005|Helix-turn-helix, AraC type
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63770.2 68414.m07216 peptidase M1 family protein similar to ...    31   1.8  
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ...    31   1.8  
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /...    31   2.3  
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    29   9.4  

>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 945

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 29  VGVISECIERDTSLCIKEKALKFTERLAFSKDMNIFDGMSLVNIGSARSARSYEPLAEDP 88
           V  + + + +  +  +KE+ LK  E    S +  +FD  ++       +A +Y    EDP
Sbjct: 745 VHAVRKFVRKQLASELKEELLKIVENNR-STEAYVFDHSNMARRALKNTALAYLASLEDP 803

Query: 89  KARELQLDE-RIADNMGD 105
              EL L+E ++A N+ D
Sbjct: 804 AYMELALNEYKMATNLTD 821


>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 918

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 29  VGVISECIERDTSLCIKEKALKFTERLAFSKDMNIFDGMSLVNIGSARSARSYEPLAEDP 88
           V  + + + +  +  +KE+ LK  E    S +  +FD  ++       +A +Y    EDP
Sbjct: 745 VHAVRKFVRKQLASELKEELLKIVENNR-STEAYVFDHSNMARRALKNTALAYLASLEDP 803

Query: 89  KARELQLDE-RIADNMGD 105
              EL L+E ++A N+ D
Sbjct: 804 AYMELALNEYKMATNLTD 821


>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24280) [Saccharomyces
           cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
           come from this gene
          Length = 540

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 258 SVVAVVYCGPVNQDENLARALLEPFVKCQNSDYYLCGKEYVLKAVEKIRTLRTLNIIDGV 317
           +V AVV    V +DE+    + +     + SD++   KE   KA+  +++     I+D  
Sbjct: 28  TVKAVVEETKVEEDESKPEGVEKSASFKEESDFFADLKESEKKALSDLKSKLEEAIVDN- 86

Query: 318 TLLNNNPKESRSLETLSSEPAVRTKQVNEKLWETA 352
           TLL    KES  ++    E      +V +K  E A
Sbjct: 87  TLLKTKKKESSPMKEKKEEVVKPEAEVEKKKEEAA 121


>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 22  NSISENLVGVISECIERDTSLCIKEKALKFTERLA--FSKDMNIFDGMSLVNIGSARSAR 79
           NS+ E +   + E ++   S  I + +L FT RLA  F     IF G S  ++ S +  R
Sbjct: 101 NSLEEQVEKAMEEMVQPRPSCIIGDMSLPFTSRLAKKFKIPKLIFHGFSCFSLMSIQVVR 160


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,263,426
Number of Sequences: 28952
Number of extensions: 274008
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 6
length of query: 497
length of database: 12,070,560
effective HSP length: 84
effective length of query: 413
effective length of database: 9,638,592
effective search space: 3980738496
effective search space used: 3980738496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)