Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000011-TA|BGIBMGA000011-PA|IPR012464|Protein of unknown
function DUF1676
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   1.8  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   7.2  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.2  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   9.6  

>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 139

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 35 VETDTLLCLKEKAMKFTDNLAVSKDLTVVDGISFSRTG---SPRSARSYEALADDPKTRE 91
          +E +T L +KEK  K   N+A+    +  +GIS  +     + + A+   A A   + RE
Sbjct: 27 IENETKLSVKEKVAKEIANIALRSGGSESNGISKKKKNKKQTSKKAKDKLAAALKAQARE 86

Query: 92 QQVEERI 98
          ++++ +I
Sbjct: 87 ERLDTKI 93


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 28  ISAIRDCVETDTLLCLKEKAMKFTDNLAVSKDLTVVDGISFSRTGSPRSARSY 80
           I AI+ CV + ++    +   +F DN  V +++   D       G+P+  +SY
Sbjct: 569 IRAIKYCVSSSSIWNFIKPYTEFWDNERVEREIIAGDYFKNGLEGAPKILKSY 621


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 104 DFLDSHVLQLRMPKYFEEDNSVEEE 128
           DFL + VL L  P++ ++D+ +E E
Sbjct: 802 DFLSNKVLVLFRPRFIDQDSIIEFE 826


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 96  ERIMDNVVDFLDSHVLQLRMPKYFEEDNSVEE 127
           E++ D V +FL   V+Q R P+ +++ ++ EE
Sbjct: 775 EKVADQVTEFLVKKVIQ-RFPEKYDDTHNDEE 805


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 62  VVDGISFSRTGSPRSARSYEALADDPKT 89
           V DGIS   TG   S +S E +AD  +T
Sbjct: 114 VSDGISMGTTGMRYSLQSREIIADSIET 141


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,474
Number of Sequences: 5004
Number of extensions: 24854
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 2,362,478
effective HSP length: 71
effective length of query: 164
effective length of database: 2,007,194
effective search space: 329179816
effective search space used: 329179816
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)