Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000011-TA|BGIBMGA000011-PA|IPR012464|Protein of unknown
function DUF1676
         (235 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)             29   3.3  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        29   4.4  
SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8)                  28   7.7  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
          Length = 725

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 21  EDGMNRFISAIRDCVETDTLLCLKEKAMKFTDNLAVSKDLTVVDGISFSRTGSPRSA 77
           +D M R I  + D +  + L+ + + AMK+  N + S D++V+D I  S   S  S+
Sbjct: 149 QDAMARII--MTDLIAGNGLIHILDTAMKYPANFSSSSDMSVLDVIQSSNELSTLSS 203


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 56  VSKDLTVVDGISFSRTGSPRSA-RSYEALADDPKTREQQVEERIMDNVVDFLD 107
           V+K + VV G       + R    + +A  ++ + R Q+ EE++ D V +F+D
Sbjct: 235 VNKSVRVVQGACMDLDKNLRGMDANTQASLEEERNRRQKAEEQLRDKVKEFMD 287


>SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8)
          Length = 230

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 38  DTLLCLKEKAMKFTDNLAVSKD--LTVVDGI-----SFSRTGSPRSARSYEALADDPKTR 90
           D L CL+ +       L +  D  LT+ +       + S+  +P +    E   +    +
Sbjct: 103 DDLRCLRRRKANAKQGLGIKTDPVLTITNAAPPIEGATSQCDTPGALEVDEMKDEKDDEK 162

Query: 91  EQQVEERIMDNVVDFLDSH 109
           E++ E++ MDN+ DF   H
Sbjct: 163 EEEDEQKRMDNLDDFAHGH 181


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 82   ALADDPKTREQQVEERIMDNVVDF-LDSHVLQLR 114
            ALA  P TRE+ VEE ++  +VDF L     Q+R
Sbjct: 2104 ALAMIPATRERLVEEGLIQELVDFNLHQGTAQMR 2137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,409,724
Number of Sequences: 59808
Number of extensions: 173335
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 4
length of query: 235
length of database: 16,821,457
effective HSP length: 80
effective length of query: 155
effective length of database: 12,036,817
effective search space: 1865706635
effective search space used: 1865706635
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)