Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000011-TA|BGIBMGA000011-PA|IPR012464|Protein of unknown
function DUF1676
(235 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 31 0.67
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 29 2.1
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 29 3.6
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 29 3.6
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 28 4.8
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 28 4.8
>At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 72 GSPRSARSYEALADDPKTREQQVEERIMDNVVDFLDSHVLQLRM 115
G + R Y LA T+E VE+R NV + SHV++L+M
Sbjct: 203 GQKINERHYHVLAKQELTKEYIVEDRDCKNVPELDQSHVMELKM 246
>At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 72 GSPRSARSYEALADDPKTREQQVEERIMDNVVDFLDSHVLQLRM 115
G + R Y LA T+E VE+R NV + SHV++L+M
Sbjct: 203 GQKINERHYHVLAKQELTKEYIVEDRDCKNVPELDQSHVMELKM 246
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 31.1 bits (67), Expect = 0.67
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 64 DGISFSRTGSPRSARSYEALADDPKTREQQVEERIMDNVVDF 105
DG+ F+ T + Y+++ DD ++ ++++ +R+++ V F
Sbjct: 544 DGVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSF 585
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 37 TDTLLCLKEKAMKFTDNLAVSKDLTVVDGISFSR 70
TDTLL +K+K K + + VSK +VDGI R
Sbjct: 20 TDTLLVVKQKIEK-SQRVPVSKQTLIVDGIFILR 52
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 64 DGISFSRTGSPRSARSYEALADDPKTREQQVEERI-MDNVVDFLDSHVLQLRMP-KYFEE 121
DG G+ R Y+ +AD R Q+ + +D V+DFL S + P ++
Sbjct: 592 DGGYILAAGTSRYICMYD-IADQVLLRRFQISHNLSLDGVLDFLHSKKMTEAGPIDLIDD 650
Query: 122 DNSVEEEG 129
DNS EE G
Sbjct: 651 DNSDEEGG 658
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 64 DGISFSRTGSPRSARSYEALADDPKTREQQVEERI-MDNVVDFLDSHVLQLRMP-KYFEE 121
DG G+ R Y+ +AD R Q+ + +D V+DFL S + P ++
Sbjct: 632 DGGYILAAGTSRYICMYD-IADQVLLRRFQISHNLSLDGVLDFLHSKKMTEAGPIDLIDD 690
Query: 122 DNSVEEEG 129
DNS EE G
Sbjct: 691 DNSDEEGG 698
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 106 LDSHVLQLRMPKYFEEDNSVEEE 128
L+SHVLQ+R P+Y E+ V E
Sbjct: 506 LESHVLQIRRPEYVAEEKVVPIE 528
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 106 LDSHVLQLRMPKYFEEDNSVEEE 128
L+SHVLQ+R P+Y E+ V E
Sbjct: 505 LESHVLQIRRPEYVAEEKVVPIE 527
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,954,127
Number of Sequences: 28952
Number of extensions: 130049
Number of successful extensions: 268
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 12,070,560
effective HSP length: 79
effective length of query: 156
effective length of database: 9,783,352
effective search space: 1526202912
effective search space used: 1526202912
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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