GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000011-TA|BGIBMGA000011-PA|IPR012464|Protein of unknown
function DUF1676
         (235 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.2  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like
          protein protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 43 LKEKAMKFTDNLAVSKDLTVVDGISFSRTGSPRSARSYEALADDPKT 89
          L  K+   T  L++S    +    SF +  SP S+ S  +L   P T
Sbjct: 33 LSNKSNSITVPLSISTGQRLPANFSFGQVNSPPSSTSSGSLGQFPAT 79



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 57  SKDLTVVDGISFSRTGSPRSARSYEALADDPKTREQQVEERIMDNV 102
           +KD  +   +   R GS  +  S+E+L +  KT E    ++++DN+
Sbjct: 85  AKDPAIYSNL-LPRPGS--NDNSWESLIEVTKTSETSKLQQLVDNI 127


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,148
Number of Sequences: 317
Number of extensions: 1115
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 114,650
effective HSP length: 55
effective length of query: 180
effective length of database: 97,215
effective search space: 17498700
effective search space used: 17498700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)