GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000011-TA|BGIBMGA000011-PA|IPR012464|Protein of unknown
function DUF1676
         (235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868...    28   5.7  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    28   7.5  

>02_05_0209 -
           26786399-26786449,26786533-26786625,26786721-26786861,
           26786973-26787050,26787146-26787247,26787595-26787693,
           26787804-26787875,26787964-26788104,26788222-26788503
          Length = 352

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 43  LKEKAMKFTDNLAVSKDLTVVDGISFSRTGSPRSARSYEALADDPKTREQQVEERIMDNV 102
           L   +   TD +A+S+ L  + G+  +          Y +   +      ++EE +++ +
Sbjct: 3   LSNSSPVITDPVAISQQL--LGGLPSNLMQFSVMPGGYSSSGMNVGVSRLKIEEVLVNGL 60

Query: 103 VDFLDSHVLQLRMPKYFEEDNSVEEE 128
           +D + S   + R+   F EDNS EEE
Sbjct: 61  LDAMKSSSPRRRLNVAFGEDNSSEEE 86


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 54  LAVSKDLTVVDG---ISFSRTGSPRSARSYEALADDPKTREQ-QVEERIMDNVVDFLDSH 109
           LA SK   V +G   +S   +    +A +  A A    T E+ Q+E+ I     D L   
Sbjct: 455 LATSKPQKVQEGTTALSSDSSSHVAAATAAAAAATTAATLEKVQIEQIIHKTKQDILQCI 514

Query: 110 VLQLRMPKYFEEDNSVEEEG 129
           + +L+  +  E D S++EEG
Sbjct: 515 LQELQQQQLPEADKSLKEEG 534


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,741,811
Number of Sequences: 37544
Number of extensions: 149068
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 14,793,348
effective HSP length: 80
effective length of query: 155
effective length of database: 11,789,828
effective search space: 1827423340
effective search space used: 1827423340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)