GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000011-TA|BGIBMGA000011-PA|IPR012464|Protein of unknown
function DUF1676
         (235 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 85  DDPKTREQQVEERI-MDNVVDFLDSHV-LQLRMPKYFEEDNSV 125
           DD   R+QQ++E   + N  D     V + L MP YF++DN++
Sbjct: 66  DDNLKRQQQLKEEYRLYNRADITKRKVPVHLYMPPYFKDDNNM 108


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 85  DDPKTREQQVEERI-MDNVVDFLDSHV-LQLRMPKYFEEDNSV 125
           DD   R+QQ++E   + N  D     V + L MP YF++DN++
Sbjct: 66  DDNLKRQQQLKEEYRLYNRADITKRKVPVHLYMPPYFKDDNNM 108


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,014,760
Number of Sequences: 27539
Number of extensions: 130520
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 12,573,161
effective HSP length: 79
effective length of query: 156
effective length of database: 10,397,580
effective search space: 1622022480
effective search space used: 1622022480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)