GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000011-TA|BGIBMGA000011-PA|IPR012464|Protein of unknown
function DUF1676
         (235 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 20/93 (21%), Positives = 37/93 (39%)

Query: 33  DCVETDTLLCLKEKAMKFTDNLAVSKDLTVVDGISFSRTGSPRSARSYEALADDPKTREQ 92
           D    D +  L E A    D   + K+L +    S + T +     +YE + +     + 
Sbjct: 225 DGFRIDAVPHLFESANISLDEPPLGKNLNLSLHASLNHTLTKDQPETYELVKEWRDFVDN 284

Query: 93  QVEERIMDNVVDFLDSHVLQLRMPKYFEEDNSV 125
             EE   D +V   +++       KY+E  ++V
Sbjct: 285 YAEENKRDEIVLLTEAYSSLENTLKYYEVGSNV 317


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 120 EEDNSVEEEGRG 131
           +E+N  EE+GRG
Sbjct: 283 DEENEEEEDGRG 294


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,874
Number of Sequences: 429
Number of extensions: 1247
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 140,377
effective HSP length: 56
effective length of query: 179
effective length of database: 116,353
effective search space: 20827187
effective search space used: 20827187
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)