Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000010-TA|BGIBMGA000010-PA|IPR012464|Protein of unknown
function DUF1676
         (240 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   1.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.5  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 10  IGVAWAMPAAEQDSDPNILGSVLGVVKECVDGDVTL 45
           + +AW  P  +     + LGS+   VK+ V GD  L
Sbjct: 151 LDLAWEFPENKPKKIRSKLGSIWHSVKKTVAGDKVL 186


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 205 VAHPHHEEHYASSGHGWGRSID 226
           ++HP H   YA +  G GRS D
Sbjct: 593 LSHPFHLHGYAFNVVGIGRSPD 614


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 205 VAHPHHEEHYASSGHGWGRSID 226
           ++HP H   YA +  G GRS D
Sbjct: 593 LSHPFHLHGYAFNVIGIGRSPD 614


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 207 HPHHEEHYASS 217
           HPH  +HY ++
Sbjct: 23  HPHQHQHYGAA 33


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 207 HPHHEEHYASS 217
           HPH  +HY ++
Sbjct: 23  HPHQHQHYGAA 33


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,757
Number of Sequences: 317
Number of extensions: 1269
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 114,650
effective HSP length: 55
effective length of query: 185
effective length of database: 97,215
effective search space: 17984775
effective search space used: 17984775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)