Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000010-TA|BGIBMGA000010-PA|IPR012464|Protein of unknown
function DUF1676
         (240 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    31   0.92 
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    29   3.7  
At2g35270.1 68415.m04326 DNA-binding protein-related contains Pf...    28   4.9  
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /...    28   4.9  
At3g10750.1 68416.m01294 hypothetical protein                          28   6.5  
At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase sm...    27   8.6  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    27   8.6  
At1g67230.1 68414.m07652 expressed protein                             27   8.6  

>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 2   KCLVVLMVIGVAWAMPAAEQDSDPNILGSVLGVVKECVDGDVTLCLKEKALRYVE-TLRS 60
           +CL+V    G +W+ P  ++  D       +  V E    DV+  LK +   Y+E   R 
Sbjct: 122 RCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVSKLLKRE--EYIEFVFRQ 179

Query: 61  KR-EITLVDGVTLDSKGSPRSARALEPL 87
           +R  + +V GVT D+  +P + + +  +
Sbjct: 180 QRVRLYIVAGVTEDTVFAPLTKKEISEI 207


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 87  LPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSAVE 125
           +PEEP       E+ +V  V + +EN+ V+    SSA E
Sbjct: 674 VPEEPAVASDPEEAEIVADVGESIENHTVEENTVSSAEE 712


>At2g35270.1 68415.m04326 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 285

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 192 LLASKHTETSYEVVAHPHHEEHYASSGHGWG 222
           ++A+  T  +YE +    HEEH  S G G G
Sbjct: 212 VMAASFTNVAYERLPLDEHEEHLQSGGGGGG 242


>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24280) [Saccharomyces
           cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
           come from this gene
          Length = 540

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 40  DGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVE 99
           + D    LKE   + +  L+SK E  +VD   L +K   + +  ++   EE    EA+VE
Sbjct: 57  ESDFFADLKESEKKALSDLKSKLEEAIVDNTLLKTK--KKESSPMKEKKEEVVKPEAEVE 114

Query: 100 SRLVDGVADFLE 111
            +  +   + +E
Sbjct: 115 KKKEEAAEEKVE 126


>At3g10750.1 68416.m01294 hypothetical protein 
          Length = 299

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 31  VLGVVKECVDGDVTLCLKEKALRYVETLRSKRE-IT-LVDGVTLDSKGSPRS 80
           ++ VV +  D  V L L    LRY+  +R+K + +T  +D  +L+  GS RS
Sbjct: 125 LVNVVYKDQDSHVRLLLSCPVLRYLLVIRNKSDNVTRFIDSQSLEKNGSGRS 176


>At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase R2 [Nicotiana
           tabacum] GI:1044912; contains Pfam profile PF00268:
           Ribonucleotide reductase, small chain
          Length = 332

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 55  VETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYV 114
           +E + S+    L+D    D+K      RA+E +P    A++AQ   + +DG   F E  +
Sbjct: 106 IENIHSEMYSLLLDTYIKDNKERDHLFRAIETIP--CVAKKAQWAMKWIDGSQTFAERII 163


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
            ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 36   KECVDGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEE 90
            KE VDG   +  KE   +  ETL SK E+T+ + V ++ +         +  PEE
Sbjct: 1115 KETVDGSREIADKEAVAKTKETLGSK-EVTVGEAVNMEVENQDEEDDDGDDDPEE 1168


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 75  KGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLDEA 134
           K     AR L+ L E+ +ARE     +LVD     L++   +F+L    +E  R+S+D++
Sbjct: 314 KSIETKARELQALQEKLEAREKMAVQQLVDEHQAKLDSTQREFEL---EMEQKRKSIDDS 370


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,364,400
Number of Sequences: 28952
Number of extensions: 151604
Number of successful extensions: 471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 12,070,560
effective HSP length: 79
effective length of query: 161
effective length of database: 9,783,352
effective search space: 1575119672
effective search space used: 1575119672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)