GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000010-TA|BGIBMGA000010-PA|IPR012464|Protein of unknown
function DUF1676
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    31   0.83 
04_03_0359 - 14864750-14864998,14865122-14865345,14867358-148674...    30   1.9  
08_01_0203 + 1639993-1641141                                           28   5.9  
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    28   5.9  
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588...    28   5.9  
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468...    28   7.8  

>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 72   LDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSA 123
            L  KGSPRS +   P P E   +E+Q+     DG    L++ VVQ   PS A
Sbjct: 3519 LQDKGSPRSTQ--PPPPIESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565


>04_03_0359 -
           14864750-14864998,14865122-14865345,14867358-14867475,
           14867586-14867960,14869257-14869673
          Length = 460

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 73  DSKGSPRSARALEPLPEEPKAREAQVESRLVDGV 106
           D+ G+P  A A E +P  P AR+A    R+  GV
Sbjct: 14  DAPGAPPPAPAAEAVPSRPLARDATYGGRVYGGV 47


>08_01_0203 + 1639993-1641141
          Length = 382

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 1   MKCLVVLMVIGVAWAMPAAEQDSDP-NILGSVLGVVKECVDGDVTLCLK 48
           ++C+V +++  V  A  A E D  P NILG + G++ +    DVTL ++
Sbjct: 151 IECVVNVVLDPVVTAGDAPELDHPPSNILGHLAGLLGDKGTADVTLVVR 199


>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 75  KGSPRSARALEPLPEEPKAR-EAQ-VESRLVDGVADFL 110
           +G P SA  LE L E+ KA+ E+Q +ES LV G  DF+
Sbjct: 326 EGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFV 363


>01_06_1535 +
           38057802-38057999,38058338-38058437,38058730-38058890,
           38059166-38059363,38059442-38059534,38059732-38059854,
           38060637-38060884,38061004-38061175,38061407-38061493,
           38061523-38061786,38062415-38062577,38062839-38062926,
           38063010-38063079,38063566-38063694,38063773-38063811,
           38065539-38065760,38065935-38065999,38066095-38066288,
           38066539-38066805,38066908-38066995,38067091-38067216,
           38067291-38067400,38067523-38067671
          Length = 1117

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 92  KAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLD 132
           K RE+ ++ RL+  V DF E Y  Q K        +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161


>04_04_0369 -
           24745140-24745510,24746005-24746089,24746746-24746878,
           24747764-24748584
          Length = 469

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 48  KEKALRYVETLRSKREITLVDGVTLDSKGS--PRSARALEPLPEEPKAREAQVES--RLV 103
           KE+ +RY+  L  K +    +  TL ++ S   R    L     + K R   +E   RL 
Sbjct: 286 KERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSENSDLKIRVQTMEQQVRLQ 345

Query: 104 DGVADFLENYVVQFKLPSSAV 124
           D + D L + + Q K+ +  V
Sbjct: 346 DALNDRLRDEIQQLKVATGQV 366


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,483,040
Number of Sequences: 37544
Number of extensions: 189560
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 14,793,348
effective HSP length: 80
effective length of query: 160
effective length of database: 11,789,828
effective search space: 1886372480
effective search space used: 1886372480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)